GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002989-TA|BGIBMGA002989-PA|IPR001135|NADH-ubiquinone
oxidoreductase, chain 49kDa, IPR010219|NADH dehydrogenase I, D subunit
         (412 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   2.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   6.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 260 YDMYDFDVPVGTFGDSYDRHLLRLEEMRQSLRIINQVLDTIP 301
           YD+ DF      FG   D   L  E  +Q+L++I   LD +P
Sbjct: 82  YDISDFKDVDPIFGTIKDLEDLTAEAKKQNLKVI---LDLVP 120


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 15 YNSKLRPLERKLQNMWINFG 34
          YN  +RP++   + + +NFG
Sbjct: 38 YNKLIRPVQNMTEKVHVNFG 57


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 295 QVLDTIPPGEIKTDDSKICLPSRVEMK 321
           Q++D I  G+I  DD  + L     MK
Sbjct: 42  QIIDDINEGKINMDDENVLLFIECTMK 68


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.140    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,402
Number of Sequences: 429
Number of extensions: 5109
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 412
length of database: 140,377
effective HSP length: 59
effective length of query: 353
effective length of database: 115,066
effective search space: 40618298
effective search space used: 40618298
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)