GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002984-TA|BGIBMGA002984-PA|IPR006195|Aminoacyl-transfer
RNA synthetase, class II, IPR004365|nucleic acid binding, OB-fold,
tRNA/helicase-type, IPR004364|tRNA synthetase, class II (D, K and N),
IPR002313|Lysyl-tRNA synthetase, class-2, IPR008994|Nucleic
acid-binding, OB-fold
         (580 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    25   1.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    25   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   6.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   6.9  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 397 TPEANDFLNNLCNTHQIECSP-PRTTARLLDKLVSVFLEEE 436
           TP+A +   NL +  + ECSP      ++ DK+V   ++ +
Sbjct: 57  TPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLIDNK 97


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 397 TPEANDFLNNLCNTHQIECSP-PRTTARLLDKLVSVFLEEE 436
           TP+A +   NL +  + ECSP      ++ DK+V   ++ +
Sbjct: 57  TPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLIDNK 97


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 488  TQRERFE--------EQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGL 530
            TQRER+         +QA N   G D+ P T E       + L   GG  L
Sbjct: 1660 TQRERYYATIHKVALQQAANTGGGPDKIPETAEDISPYATFQLSEGGGGSL 1710


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 488  TQRERFE--------EQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGL 530
            TQRER+         +QA N   G D+ P T E       + L   GG  L
Sbjct: 1656 TQRERYYATIHKVALQQAANTGGGPDKIPETAEDISPYATFQLSEGGGGSL 1706


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 380 TLERVLNVK----LPAPDKLDTPEANDFLNNLCNTHQ 412
           TL+ ++++K    LP   +++ PE N+++  L N  Q
Sbjct: 353 TLQMIVSMKIMENLPQSGRINDPEGNEYMLALSNRMQ 389


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 528 WGLGVDRLTMFLTDSNNIKEVLLFPA 553
           WGLG+ +L  +++++++   VL   A
Sbjct: 102 WGLGICKLRAYVSETSSYVSVLTIVA 127


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 552 PAMKPDDPNKNNTEEENVGVQTSVPNGAN 580
           P  + DD + + ++ EN+  Q   PN ++
Sbjct: 81  PKEETDDKDDDESDNENIKSQKEFPNSSS 109


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,214
Number of Sequences: 429
Number of extensions: 7650
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 580
length of database: 140,377
effective HSP length: 61
effective length of query: 519
effective length of database: 114,208
effective search space: 59273952
effective search space used: 59273952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)