GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002982-TA|BGIBMGA002982-PA|undefined
         (178 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    29   0.034
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.56 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.74 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 28.7 bits (61), Expect = 0.034
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 11  QKDGSEKNNNEDSLEENDGATE-TQEMDISQNSNESNEMEKEIQDNYQDD 59
           Q D  +  N ++  ++ND      ++ D  +N N  N+ +    DN ++D
Sbjct: 485 QNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRND 534



 Score = 25.0 bits (52), Expect = 0.42
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 9   DIQKDGSEKNNNE--DSLEENDGATETQEMDISQNSNESNEMEKEIQDN 55
           D +++G+ +N N+  D+ +  +   + +     QN N++N+ +    DN
Sbjct: 487 DNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDN 535



 Score = 23.8 bits (49), Expect = 0.97
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 9   DIQKDGSEKNNNEDSLEENDGATETQEMDISQNSNESNEMEKEIQDNYQDD 59
           D +++G+ +N+N+ +    +G    ++ D  QN N  N+ ++    N Q+D
Sbjct: 477 DNKQNGNRQNDNKQNGNRQNG---NKQNDNKQNGNRQNDNKR--NGNRQND 522



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/54 (16%), Positives = 23/54 (42%)

Query: 11  QKDGSEKNNNEDSLEENDGATETQEMDISQNSNESNEMEKEIQDNYQDDQGGKG 64
           +++G+ +N+N  +  + +G  +          N++ +       N Q+D    G
Sbjct: 454 KQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNG 507



 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 131 CIKNEENVLTNRYFESRPENEENAELVERFRKM 163
           C+ NE  VL    F+   +NEE  +++   + M
Sbjct: 332 CV-NEHQVLQRESFDVVAQNEETLQMIVSMKIM 363



 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/56 (16%), Positives = 24/56 (42%)

Query: 9   DIQKDGSEKNNNEDSLEENDGATETQEMDISQNSNESNEMEKEIQDNYQDDQGGKG 64
           D +++ +++N N  +  + +G  +          N + + + +   N Q+D    G
Sbjct: 462 DNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNG 517


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 15  SEKNNNEDSLEENDGATETQEMDISQNSNESNEM 48
           +  NNN ++   N+GA +    + + N+N + +M
Sbjct: 239 NNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDM 272


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 14  GSEKNNNEDSLEENDGATETQEMDISQNSNESNEMEKEIQDNY 56
           G+   NNEDS +    A++      S N +E+ E E     N+
Sbjct: 253 GNAAGNNEDSSDSGAAASDRPPASASSNEHEA-ESEHTSTPNF 294


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   DIQKDGSEKNNNEDSLEENDGATETQEMDISQNSNESNEMEKEIQDN 55
           DI   G  + +++D  + NDG   +   DI       NE+ + +Q+N
Sbjct: 185 DINDIGLNRRDSDDGSDGNDGDESSCRADIRILDLSRNEITR-LQEN 230


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 15  SEKNNNEDSLEENDGATETQEMDISQNSNE 44
           S K++N+++ + ND A  + + +   N+N+
Sbjct: 435 SSKSDNQNNNQHNDQAHHSSKSNNRHNNND 464


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 32  ETQEMDISQNSNESNEMEKEIQDNYQDD 59
           ET + D  ++ NE+ + +KE  ++   D
Sbjct: 84  ETDDKDDDESDNENIKSQKEFPNSSSSD 111


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/41 (19%), Positives = 22/41 (53%)

Query: 28  DGATETQEMDISQNSNESNEMEKEIQDNYQDDQGGKGIISS 68
           +  ++  ++ ISQ++ E       +++  + +  GKGI+ +
Sbjct: 552 EATSQAMQIHISQSTKELLSPSYRVKERGEIEVKGKGIMKT 592


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,454
Number of Sequences: 429
Number of extensions: 2138
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 178
length of database: 140,377
effective HSP length: 54
effective length of query: 124
effective length of database: 117,211
effective search space: 14534164
effective search space used: 14534164
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)
S2: 41 (20.6 bits)