GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002980-TA|BGIBMGA002980-PA|undefined
         (406 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   6.2  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 280 NSTNYLEETTILKVIHEVLVDGYYYYMFYSDNDIVFNDIHAIFDIYKPTFQYVNNSSSKM 339
           N T  +   T+L V+ +   +     + +S N+ +  DI  + +       Y ++ +S +
Sbjct: 481 NFTIEILNKTVLAVVRQSEEEAVSLLINFSKNNTIV-DISKLVNKRNNAKIYTSSVNSNL 539

Query: 340 CINKTRCEFDIGFFSDELVIVEVPTKG 366
            +N+T     I    D  +IV+  T G
Sbjct: 540 TVNQTVNPVAINIPGDTSIIVDSSTSG 566


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 207 TSGTNKKQQKRDTRTKLHNPNTILDTGVHH 236
           TS T  K +  +  + LH+PN  ++  VHH
Sbjct: 385 TSLTKSKMEVMEL-SDLHHPNCKINRKVHH 413


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,051
Number of Sequences: 429
Number of extensions: 5336
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 406
length of database: 140,377
effective HSP length: 59
effective length of query: 347
effective length of database: 115,066
effective search space: 39927902
effective search space used: 39927902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)