GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002979-TA|BGIBMGA002979-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (274 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    48   7e-08
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 48.4 bits (110), Expect = 7e-08
 Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 10/145 (6%)

Query: 4   KVAVVTGSNKGIGFEIVKGLCQKFNGVVYLTARNEERGRQAIRKLRE--FELNPLFHLLD 61
           +VA+VTG+N GIG  +++ L  K   V+ + A   ++ +  + +L+    +L PL    D
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGI-APQVDKMKTLVEELKSKPGKLVPL--QCD 64

Query: 62  VTDEESIKEFASHISKHHSGIDVFVNNAGI-LDFDKSVPSYEDAKKLIDTNFMSLLTISK 120
           ++++  I +    + K+   ID+ +NNA I +D         D KK+ D N + L  + +
Sbjct: 65  LSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQ 124

Query: 121 ILYPLLK----NDARIINLSSDWGL 141
            +  L+K    N+  I+N++   GL
Sbjct: 125 EVLKLMKKKGINNGIIVNINDASGL 149


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 213 QGKDISVNCVHPGFIKTDMT--KGMGD 237
           QG D  V C   GF K  +T  K  GD
Sbjct: 692 QGSDARVECKADGFPKPQVTWKKAAGD 718


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 15  IGFEIVKGLCQKFNGVVYLTARNEERGRQAI 45
           +GFE  KGL ++  G+      +  +GR AI
Sbjct: 169 MGFEPGKGLGKQLQGISTPVEAHLRKGRGAI 199


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,567
Number of Sequences: 429
Number of extensions: 2699
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 274
length of database: 140,377
effective HSP length: 57
effective length of query: 217
effective length of database: 115,924
effective search space: 25155508
effective search space used: 25155508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)