GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002977-TA|BGIBMGA002977-PA|IPR012388|Cdk5 and c-Abl
linker protein cables, IPR011028|Cyclin-like
         (520 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    27   0.38 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.38 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   6.1  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 30  HKEKEMDLIDNKSYKNDKANGPLKTVEISNDKE-NVSRNSVHGRSKNQSSPHRHG----- 83
           H EKE  L +  S K    +   +     N +E    R +   RS+N++   R       
Sbjct: 23  HNEKEKFLEERTSRKRYSRSREREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKII 82

Query: 84  TDNYSLSSDSEYTTNLTPVKSGLNSNFR 111
           ++N SLS++  Y  N     +  N+N++
Sbjct: 83  SNNNSLSNNYNYNNNYNNYNNNYNTNYK 110


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 80  HRHGTDNYSLSSDSEYTTNLTPVKSGLNSNFRDRCS-------SGNIESSKEKHVSLRSK 132
           H+  T N  L+SD +      PVK   +S+    CS       +G    S E    +  K
Sbjct: 258 HQPVTVNRQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQK 317

Query: 133 RGHLVSMAGINTEEKSSSESLTFGRFRTSSTCIPENHIMINEVRF 177
               V  +   T    +S   T  R   +STC   N     ++RF
Sbjct: 318 LEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRF 362


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 88  SLSSDSEYTTNLTPVKSGLNSNFR 111
           SLS D      L PVKS  +S +R
Sbjct: 431 SLSGDESDVVELQPVKSSKSSGWR 454


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,891
Number of Sequences: 429
Number of extensions: 6887
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 520
length of database: 140,377
effective HSP length: 61
effective length of query: 459
effective length of database: 114,208
effective search space: 52421472
effective search space used: 52421472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)