GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002975-TA|BGIBMGA002975-PA|undefined
         (294 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.80 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 67 TGNNPFYLRIPHENYYRGHHLK 88
          TG  PF     H+ + R HHLK
Sbjct: 5  TGEKPFECPECHKRFTRDHHLK 26


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 269 PGWVINLKDECILKPK 284
           P W   +   CILKPK
Sbjct: 29  PSWDGKMPQPCILKPK 44



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 93  PMTLLELQKLIDRNRVDISKPIDIA 117
           P T LE+QK I + + D+ + I  A
Sbjct: 157 PQTYLEIQKXIKKAKEDVIEVIQKA 181


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 30  GSKITQKRGRGQHGGDKHGAGNKGSGQRQN 59
           G++    +  G    D    GN+ +G +QN
Sbjct: 472 GNRQNDNKQNGNRQNDNKQNGNRQNGNKQN 501


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,231
Number of Sequences: 429
Number of extensions: 4431
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 294
length of database: 140,377
effective HSP length: 57
effective length of query: 237
effective length of database: 115,924
effective search space: 27473988
effective search space used: 27473988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)