GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002972-TA|BGIBMGA002972-PA|IPR001494|Importin-beta,
N-terminal, IPR000357|HEAT
         (852 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    26   1.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    26   1.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 539 VQKTTMVILERLQQVLQMEIHVSSQADRSQ 568
           + KTT+  +ER++ +LQ++ H+S Q    Q
Sbjct: 23  ISKTTVAPIERVKLLLQVQ-HISKQISEEQ 51


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 539 VQKTTMVILERLQQVLQMEIHVSSQADRSQ 568
           + KTT+  +ER++ +LQ++ H+S Q    Q
Sbjct: 23  ISKTTVAPIERVKLLLQVQ-HISKQISEEQ 51


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,129
Number of Sequences: 429
Number of extensions: 8195
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 852
length of database: 140,377
effective HSP length: 64
effective length of query: 788
effective length of database: 112,921
effective search space: 88981748
effective search space used: 88981748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)