GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002970-TA|BGIBMGA002970-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (685 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    27   0.39 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   4.8  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 268 LWVLARAIVGLTIPAVYQIPFIISLELAGPN 298
           LW +    VG    ++ QIP II L   GPN
Sbjct: 2   LWRMTGTWVGGFCHSIIQIPVIIQLPFCGPN 32


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 275 IVGLTIPAVYQIPFIISLELAGPNYRSFVTVMTCIFYTLGLILLSVVTYLLRDWRSLALA 334
           +V  TIP++      +S +   P+Y S++ V+T +  ++     + + YL + +   A+A
Sbjct: 616 VVEETIPSLNSTNVTLSTKCPYPSYYSYIGVLTLVATSMP----TYICYLGKAYLMYAIA 671

Query: 335 TSVPFTVYYL 344
            S  F   +L
Sbjct: 672 GSQCFINIWL 681


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,235
Number of Sequences: 429
Number of extensions: 7284
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 685
length of database: 140,377
effective HSP length: 62
effective length of query: 623
effective length of database: 113,779
effective search space: 70884317
effective search space used: 70884317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)