GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002969-TA|BGIBMGA002969-PA|IPR003409|MORN motif
         (583 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.32 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   3.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   5.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   9.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   9.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 3   EWKNDKRTGYGISERSDGLRYEGEWFENRKYGYGVTTFRDNTKEEGKYKNNV-----LIT 57
           EWK+     +G  ER D     GE+   + Y + V  +RD T    +  N V     ++T
Sbjct: 42  EWKHID-FDFGSDERRDAAIKSGEFDHTKNYPFDVDRWRDKTFVTIERNNGVPSSLNVVT 100

Query: 58  SQKRKHMFLMR 68
           ++K K   L+R
Sbjct: 101 NKKGKGGPLLR 111



 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 200 RLSTQYPKTTGNQPVDPRLA---NSSNYNSDNRN 230
           R    + +  GNQ  D + A   N++N N+DN+N
Sbjct: 418 RCGRYHNQNAGNQNADNQNADNQNANNQNADNQN 451


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 3  EWKNDKRTGYGISERSDGLRYEGEWFENRKYGYGVTTFRDNT 44
          EWK      +G  ER       GE+   + Y + V  +RD T
Sbjct: 37 EWKYFDYD-FGSEERRQAAIQSGEYDHTKNYPFDVDQWRDKT 77


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 218 LANSSNYNSDNRNLGPPH 235
           L+N+ NYN+ N N  P H
Sbjct: 318 LSNNYNYNNYNNNYKPLH 335


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 124 IAQMTAKQFAPDFKHPGFDRIGLREKYRQKAYDAQVAPPVPQESEKILD 172
           ++Q +    APD +      +     ++ +      APP+P E ++ L+
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALE 118


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 558 PNPTPPPPIQRAAGGGGGRKVSNFSI 583
           P P PPPP   ++G    +    F I
Sbjct: 339 PKPAPPPPPPSSSGPDSAKLDKIFDI 364


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,734
Number of Sequences: 429
Number of extensions: 9176
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 6
length of query: 583
length of database: 140,377
effective HSP length: 61
effective length of query: 522
effective length of database: 114,208
effective search space: 59616576
effective search space used: 59616576
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)