GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002968-TA|BGIBMGA002968-PA|IPR003409|MORN motif
         (194 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.9  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 49  RLRVMQPSELADAAHAASGNPPQRGLNGGRFDFDDGGTYCGSWDDGKAHGHG 100
           ++R  +  ++A++   A  NP   G+ G   D     T      D KAH  G
Sbjct: 251 QMRKNRFQKIAESMKTARENPGPPGVPGDHGDHAPKQTVRFKVHDPKAHSKG 302


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 14/40 (35%), Positives = 15/40 (37%)

Query: 35  GGGCAREALPSAAPRLRVMQPSELADAAHAASGNPPQRGL 74
           G G AR     A     V  PS      H   GNP Q+ L
Sbjct: 79  GKGAARSDDWLANANSPVGSPSAALQPQHVVYGNPQQQQL 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,382
Number of Sequences: 429
Number of extensions: 2402
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 140,377
effective HSP length: 54
effective length of query: 140
effective length of database: 117,211
effective search space: 16409540
effective search space used: 16409540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)