GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002967-TA|BGIBMGA002967-PA|IPR001753|Enoyl-CoA
hydratase/isomerase, IPR006176|3-hydroxyacyl-CoA dehydrogenase,
NAD-binding, IPR006108|3-hydroxyacyl-CoA dehydrogenase, C-terminal,
IPR012803|Fatty acid oxidation complex, alpha subunit, mitochondrial,
IPR008927|6-phosphogluconate dehydrogenase, C-terminal-like
         (697 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    24   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   6.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   8.5  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 477 GFYTTRILSTMLSEAVRLLQEGV-DPKELD 505
           GF   RI   +L+EA RL+ +G+ + K++D
Sbjct: 7   GFVLNRIQYAILNEAWRLVADGILNAKDVD 36


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 4   VSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIEN 41
           ++++  +I TN+  + A  I GKP   +  +  S++++
Sbjct: 876 INDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQS 913


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 553 QDLVQAGYMGRKSGKGFYVYEKGSKNREVNHGAIKILKDKYALEPRG 599
           Q++    Y   KSGKGF ++ +  KN    +     L + Y L   G
Sbjct: 166 QNIAVIEYRIPKSGKGFSLFARFLKNPRPCNVLATSLTEPYTLRNYG 212


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.136    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,412
Number of Sequences: 429
Number of extensions: 7059
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 697
length of database: 140,377
effective HSP length: 62
effective length of query: 635
effective length of database: 113,779
effective search space: 72249665
effective search space used: 72249665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)