GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002966-TA|BGIBMGA002966-PA|IPR000210|BTB,
IPR013069|BTB/POZ
         (450 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      36   7e-04
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.98 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   6.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   6.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   9.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   9.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   9.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 35.9 bits (79), Expect = 7e-04
 Identities = 18/83 (21%), Positives = 37/83 (44%)

Query: 11 NNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLILGISSPVFEAMLYGPLSNNNDIH 70
          N ++S+    + L    ++ D      G+  KAH+++L   SP F  +L      +  I 
Sbjct: 13 NYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIV 72

Query: 71 IPDIEPEIFQLILNYIYTDNVDI 93
          + D+       ++ +IY   V++
Sbjct: 73 LQDVAFSDLHALVEFIYHGEVNV 95


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 47 ILGISSPVFEAMLYGPLSN-NNDIHIPDIEPEIFQLI 82
          ++ +S P +EA  YG  +  NN   +  + P++  LI
Sbjct: 1  MIAVSGPSYEAFSYGGQARFNNQTVVDKVPPDMLHLI 37


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
          protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 6  NENSCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLI 47
          +E  C N       +KK+L     + CN C   +K  A+K++
Sbjct: 49 DEGPCTNEGR---ELKKILPDALSTGCNKCNEKQKHTANKVV 87


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
          protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 6  NENSCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLI 47
          +E  C N       +KK+L     + CN C   +K  A+K++
Sbjct: 49 DEGPCTNEGR---ELKKILPDALSTGCNKCNEKQKHTANKVV 87


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/53 (20%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 252 EKIEKQIKNTAKTNDNDA---ENAVSNIRRKTLKLQWYSCYRSSIRSMAPIII 301
           + I +++KN    ++ND    +N +SN  ++T   +W +  +++I  +  +++
Sbjct: 360 QNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRT---EWSATVKAAISEVQRVVL 409


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/53 (20%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 252 EKIEKQIKNTAKTNDNDA---ENAVSNIRRKTLKLQWYSCYRSSIRSMAPIII 301
           + I +++KN    ++ND    +N +SN  ++T   +W +  +++I  +  +++
Sbjct: 398 QNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRT---EWSATVKAAISEVQRVVL 447


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 409 VEFRDKFLRYCGHKILFEFDDMPV 432
           ++F  K L+ CG   L +++D P+
Sbjct: 136 IDFIQKNLQCCGVHSLSDYNDKPI 159


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,231
Number of Sequences: 429
Number of extensions: 6212
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 450
length of database: 140,377
effective HSP length: 60
effective length of query: 390
effective length of database: 114,637
effective search space: 44708430
effective search space used: 44708430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)