GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002964-TA|BGIBMGA002964-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR001628|Nuclear hormone receptor, DNA-binding,
IPR003070|Orphan nuclear receptor, IPR001723|Steroid hormone receptor,
IPR000536|Nuclear hormone receptor, ligand-binding
         (567 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...   103   5e-24
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    89   9e-20
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    89   9e-20
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    84   3e-18
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    46   6e-07
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    42   1e-05
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   2.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   2.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   6.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score =  103 bits (246), Expect = 5e-24
 Identities = 88/352 (25%), Positives = 159/352 (45%), Gaps = 38/352 (10%)

Query: 232 LCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKY-VCLAEKSCPVDXXXXXXXXXXXX 290
           LC VCGD A+  HYGV +CEGCKGFF+R++Q+  +Y  C   + C +             
Sbjct: 66  LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 125

Query: 291 XXCLAVGMVKEVVRTDSL-KGRRGRLXXXXXXXXXXXXXXXX---------XLITALVRA 340
             C+AVGM ++ VR   + K  + R+                          L+  +V+A
Sbjct: 126 KKCIAVGMSRDAVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQA 185

Query: 341 HVDTSPDFANLDYS----QYRE-PS----------PLEP---PMS-DLEVIHQFYSLLTT 381
           H+DT  DF     +    + RE P+          PL P   P++   E++  F    + 
Sbjct: 186 HLDTC-DFTRDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSP 244

Query: 382 SIDMIKLFAEKVPGYGDLCPEDREQLFASARLELFVLRLAYRTRLEDTKLTFCNGLVLDK 441
           +I  +  FA+++PG+  L  +D+  L  +   E+ ++RLA     +   +   NG VL +
Sbjct: 245 AIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKR 304

Query: 442 RQCQRSFGD--WLHAVLDFSNTLHSMDIDISTFACLCALTLI-TDRHGLKEPHRVEQLQM 498
                S      + ++ DF+  ++S+ +  +     C++ +I  DR GL+    VE++  
Sbjct: 305 ESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHN 364

Query: 499 KIIGCLRAHMPXXXXXXXXAPHFSR-VLGALPELRSLSVQGLQRIFSLKLED 549
           K+   L+  +          P   R +L  +P+LR+L+    +++ + K+ +
Sbjct: 365 KLRNALQTVL---AQNHPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTE 413


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 89.0 bits (211), Expect = 9e-20
 Identities = 50/124 (40%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 183 SNSSNDSPKLHGTRVHCMQPSTPNSASSSPGVAPADNTGPRAAPSSPSQLCAVCGDTAAC 242
           S S  +SP       H    ST  S  +   VAP     P    S    LC++CGD A+ 
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNK-AVAPYPPNHPL---SGSKHLCSICGDRASG 119

Query: 243 QHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKSCPVDXXXXXXXXXXXXXXCLAVGMVKEV 302
           +HYGV +CEGCKGFFKRTV+K   Y C  EKSC +D              CLA+GM +E 
Sbjct: 120 KHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREA 179

Query: 303 VRTD 306
           V+ +
Sbjct: 180 VQEE 183


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 89.0 bits (211), Expect = 9e-20
 Identities = 50/124 (40%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 183 SNSSNDSPKLHGTRVHCMQPSTPNSASSSPGVAPADNTGPRAAPSSPSQLCAVCGDTAAC 242
           S S  +SP       H    ST  S  +   VAP     P    S    LC++CGD A+ 
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNK-AVAPYPPNHPL---SGSKHLCSICGDRASG 119

Query: 243 QHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKSCPVDXXXXXXXXXXXXXXCLAVGMVKEV 302
           +HYGV +CEGCKGFFKRTV+K   Y C  EKSC +D              CLA+GM +E 
Sbjct: 120 KHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREA 179

Query: 303 VRTD 306
           V+ +
Sbjct: 180 VQEE 183


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 83.8 bits (198), Expect = 3e-18
 Identities = 49/142 (34%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 163 ISAE-QAARQRRSSLPVQRSESNSSNDSPKLHGTRVHCMQPSTPNSASSSPGVAPADNTG 221
           ++AE Q  +Q  +      S S+    SP     R    QP + N   SS G       G
Sbjct: 118 LAAETQQQQQHNNGYASPMSTSSYDPYSPNSKIGRDELSQPGSLNGYGSSDGCDARKKKG 177

Query: 222 PRAAPSSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKSCPVDXXX 281
           P   P    +LC VCGD A+  HY   TCEGCKGFF+R++ K + Y C    +C +D   
Sbjct: 178 P--TPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYM 235

Query: 282 XXXXXXXXXXXCLAVGMVKEVV 303
                      CL VGM  E V
Sbjct: 236 RRKCQECRLKKCLTVGMRPECV 257



 Score = 74.1 bits (174), Expect = 3e-15
 Identities = 50/193 (25%), Positives = 98/193 (50%), Gaps = 4/193 (2%)

Query: 358 EPSPLEPPMSDLEVIHQFYSLLTTSIDMIKLFAEKVPGYGDLCPEDREQLFASARLELFV 417
           +PS  E  +SD +  H    +   ++ +I  F++++PG+ +L  ED+  L  +   E+ +
Sbjct: 363 QPSEGED-ISDYKFRH-ITEITILTVQLIVEFSKRLPGFDELMREDQIALLKACSSEVMM 420

Query: 418 LRLAYRTRLEDTKLTFCNGLVLDKRQCQ-RSFGDWLHAVLDFSNTLHSMDIDISTFACLC 476
           LR+A +  ++   + F N     K        G+ +  +L F   +++M ++ + +A L 
Sbjct: 421 LRMARKYDVQTDSIIFANNQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKVNNAEYALLT 480

Query: 477 ALTLITDRHGLKEPHRVEQLQMKIIGCLRAHMPXXXXXXXXAPHFSRVLGALPELRSLSV 536
           A+ + ++R  L E  +VE++Q   +  LRA++            F+R+L  L ELR+L  
Sbjct: 481 AIVIFSERPNLLEGWKVEKIQEIYLEALRAYVDNRRRPNPGTV-FARLLSVLTELRTLGN 539

Query: 537 QGLQRIFSLKLED 549
           Q  +  FSLK ++
Sbjct: 540 QNSEMCFSLKFKN 552


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 46.4 bits (105), Expect = 6e-07
 Identities = 20/52 (38%), Positives = 26/52 (50%)

Query: 250 CEGCKGFFKRTVQKGSKYVCLAEKSCPVDXXXXXXXXXXXXXXCLAVGMVKE 301
           CEGCKGFF+R++ K + Y C    +C +D              CL VGM  E
Sbjct: 1   CEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMRPE 52


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 16/23 (69%), Positives = 18/23 (78%)

Query: 232 LCAVCGDTAACQHYGVRTCEGCK 254
           LC VCGD A+  HYGV +CEGCK
Sbjct: 8   LCRVCGDKASGFHYGVHSCEGCK 30


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 163 ISAEQAARQRRSSLPVQRSESNSSNDSPKLHGTR-VHCMQPSTPNSASSSPGVAPA 217
           +  EQ +R++R  L  +  +  +      LHG   +H +  S P  +S  PG A A
Sbjct: 109 VHKEQLSREQRF-LRRRLEQLTNQTGLHGLHGLHGLHGLSSSAPTGSSCGPGAAAA 163


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 522 SRVLGALPELRSLSVQGLQRIFSLKLEDLVPAPPLIENMFR 562
           S V+GA   + S+ V  L R+F + L       P + N  R
Sbjct: 213 SGVVGAASSVTSIQVANLLRLFRIPLVSFFSTSPELSNKQR 253


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 99  NVSAYSHQGHTSTQLLYQYHQPPIPYVPSTYYAP 132
           NVS YS  G+ S +L Y        Y+P T   P
Sbjct: 2   NVSEYSFYGNISDELRYLEKVRGPKYLPLTLIVP 35


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 440 DKRQCQRSFGDWLHA 454
           D  +C+ +FG W+H+
Sbjct: 179 DTHRCRINFGSWVHS 193


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 61  TSSPIPGPALPSFEETY--SVRYPKHEMAEFGIKMDEDCYNVSAYSHQGHTSTQLLYQYH 118
           T+ P+   A  + EET   SV   +H    +   +D D      Y  Q      L   YH
Sbjct: 290 TAQPVHS-AYKAPEETIISSVFTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYH 348

Query: 119 QPPIPYVPSTY 129
              +P++   Y
Sbjct: 349 PEDLPFIKDIY 359


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 5   QTHSNYGSSFSDLLSPQ--YQEDSTEILEENLDPFPDVEFHAPIVPEFKSQRDTSFSETS 62
           Q +S+ G   +   S Q  +  DS E   E ++  PDVE       E     + S S  S
Sbjct: 146 QMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQVEISQMTEPSSSTKS 205

Query: 63  SPIPGP 68
             + GP
Sbjct: 206 YVLEGP 211


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,234
Number of Sequences: 429
Number of extensions: 7891
Number of successful extensions: 30
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 15
length of query: 567
length of database: 140,377
effective HSP length: 61
effective length of query: 506
effective length of database: 114,208
effective search space: 57789248
effective search space used: 57789248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)