GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002962-TA|BGIBMGA002962-PA|IPR007114|Major facilitator
superfamily
         (87 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   1.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   2.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   2.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   6.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   6.7  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    19   8.9  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    19   8.9  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 31  ILKDETNPADWRKVFYVASAVYIVSNTFYLIFGTSER-QKWNEPNDSNDKTMKK 83
           I+ D+ N  D       A+   ++ NT  +    ++  Q  N  ND+N K  KK
Sbjct: 386 IVNDDFNFDDVNFRILGANVKELIRNTHCVNNNQNDNIQNTNNQNDNNQKNNKK 439


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 25  PLVAGAILKDETNPADWRKVFYVASAVYIVSNT 57
           P+   A +    NPAD+R      S V I +NT
Sbjct: 266 PVGVTAAIPTSENPADYRYFCPDGSKVPIDANT 298


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 25  PLVAGAILKDETNPADWRKVFYVASAVYIVSNT 57
           P+   A +    NPAD+R      S V I +NT
Sbjct: 266 PVGVTAAIPTSENPADYRYFCPDGSKVPIDANT 298


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 25  PLVAGAILKDETNPADWRKVFYVASAVYIVSNT 57
           P+   A +    NPAD+R      S V I +NT
Sbjct: 266 PVGVTAAIPTSENPADYRYFCPDGSKVPIDANT 298


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 33  KDETNPADWRKVFYVASAVYIVSNTFYLIFGT 64
           K E+   DW+ V  V   +++   T   + GT
Sbjct: 531 KFESVEEDWKYVAMVLDRIFLWIFTVACVLGT 562


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 17  ANIVSVIAPLVAGAILKDETNPAD 40
           A+IV     L     L+D T P D
Sbjct: 496 ASIVGTFIILCEAPALRDNTKPID 519


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 19.0 bits (37), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 62  FGTSERQKWN 71
           F T+E +KWN
Sbjct: 93  FTTNEPEKWN 102


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 19.0 bits (37), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 62  FGTSERQKWN 71
           F T+E +KWN
Sbjct: 93  FTTNEPEKWN 102


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,708
Number of Sequences: 429
Number of extensions: 840
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 87
length of database: 140,377
effective HSP length: 48
effective length of query: 39
effective length of database: 119,785
effective search space:  4671615
effective search space used:  4671615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)