GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002961-TA|BGIBMGA002961-PA|undefined
         (281 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 160 IGSIFLIFFGTVLMIQFVGMLFHRLGTLTHLLSTV 194
           I  + +I +   +++Q+ G+L +R   L HL + V
Sbjct: 408 IALVSIIMYIAFIILQYAGLLRNRSEYLNHLRANV 442


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 226 KLNTDDLDRRGIDESNLSRRKTLHNLEKSRHTKQSVINLDANF 268
           K  TDD D    D  N+  +K   N   S   + + I+  A+F
Sbjct: 82  KEETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASF 124


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 210 DALLEKHAIEIAKDLQKLNTDDLDRRGIDESNLSRRKTLHNLEKSRH 256
           D  LEKH IE  K L+       DR+ +D   + R K +    K+++
Sbjct: 429 DQKLEKHLIEYKKMLKIKRLFGKDRKIMD---MVREKIIEEKRKNKN 472


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 216 HAIEIAKDLQKLNTDDLDRRGIDESNLSRRKTLHNLEKSRHTKQSVINLDANFKRRLTIL 275
           H  +     Q  N  D  R  I  + L+    + NLE ++  +   +++  +F    TI+
Sbjct: 72  HRFKSLPRCQLSNKRDRSRELIKAAILAN-DFMKNLELTQIRRDRGLHVSCSFSAGSTII 130

Query: 276 QQGD 279
           ++GD
Sbjct: 131 REGD 134


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,670
Number of Sequences: 429
Number of extensions: 3242
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 281
length of database: 140,377
effective HSP length: 57
effective length of query: 224
effective length of database: 115,924
effective search space: 25966976
effective search space used: 25966976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)