GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002960-TA|BGIBMGA002960-PA|IPR004835|Fungal chitin
synthase
         (801 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.80 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.80 

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 657 FTVATFGLFFVTAALHPQEISCLMYICIYYITIPSMYLLLIVYSLCNLNNVSWGTREIEQ 716
           FT+  F   +  +  +  E SCL    ++     S YL+ I    C L  VSW +  ++Q
Sbjct: 209 FTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREF-SYYLIQIYIPCCMLVIVSWVSFWLDQ 267

Query: 717 KKTP 720
              P
Sbjct: 268 SAVP 271


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 657 FTVATFGLFFVTAALHPQEISCLMYICIYYITIPSMYLLLIVYSLCNLNNVSWGTREIEQ 716
           FT+  F   +  +  +  E SCL    ++     S YL+ I    C L  VSW +  ++Q
Sbjct: 209 FTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREF-SYYLIQIYIPCCMLVIVSWVSFWLDQ 267

Query: 717 KKTP 720
              P
Sbjct: 268 SAVP 271


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,869
Number of Sequences: 429
Number of extensions: 10026
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 2
length of query: 801
length of database: 140,377
effective HSP length: 63
effective length of query: 738
effective length of database: 113,350
effective search space: 83652300
effective search space used: 83652300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 47 (23.0 bits)