GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002957-TA|BGIBMGA002957-PA|IPR001878|Zinc finger,
CCHC-type
         (133 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   4.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              20   7.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    20   7.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   7.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 62  IHHRNYTTHPRM 73
           +HH+ +T HP M
Sbjct: 168 MHHQMHTQHPHM 179


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 107 TKNCKEPRCEMCHR 120
           T+  KEP C +C R
Sbjct: 27  TRPSKEPICNICKR 40


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 1/16 (6%)

Query: 86  VARGTDFQPKKCYACR 101
           VA  T F  K+CY CR
Sbjct: 81  VASTTGFS-KECYCCR 95


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 1/16 (6%)

Query: 86  VARGTDFQPKKCYACR 101
           VA  T F  K+CY CR
Sbjct: 81  VASTTGFS-KECYCCR 95


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 32  DQLDHVYGWDNKDCQFI 48
           + L +V  WD ++C FI
Sbjct: 108 ESLKNVLLWDFQECTFI 124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,171
Number of Sequences: 429
Number of extensions: 1932
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 133
length of database: 140,377
effective HSP length: 52
effective length of query: 81
effective length of database: 118,069
effective search space:  9563589
effective search space used:  9563589
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)