GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002956-TA|BGIBMGA002956-PA|IPR008197|Whey acidic
protein, core region, IPR001611|Leucine-rich repeat,
IPR003591|Leucine-rich repeat, typical subtype, IPR001932|Protein
phosphatase 2C-like
         (1210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    45   3e-06
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   2.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 45.2 bits (102), Expect = 3e-06
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 560 LEYLYLTANCLNDDATDVLIAFRGLKILHLAYNCLTRLPENCVNYWPDVEELVLSGNLFS 619
           L+ L+L  N + + A D L     L+  + +YN L  LPE       D+ E+ L+ N   
Sbjct: 239 LQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLR 298

Query: 620 RLPENM-PQLNNIRVVRAHSNKLRS----VPMFACSASVKILDFAHNELDRVDLRLLAPK 674
            LP+ +  +L  + V+    N+L S       F     + +L+ ++N L  +D R+   K
Sbjct: 299 DLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMF--K 356

Query: 675 QLKFLDISCNKKLQMDPSQFNSY 697
            L FL I   +   +D  + N++
Sbjct: 357 DLFFLQILDLRNNSIDRIESNAF 379



 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 568 NCLNDDATDVLIAFRGLKILHLAYNCLTRLPENCVNYWPDVEELVLSGN-LFSRLPENMP 626
           N L+     +  + R L+ +HLAYN L  LP+        +  L L+GN L S   +   
Sbjct: 271 NSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETT 330

Query: 627 QLNNIR--VVRAHSNKLRSVP--MFACSASVKILDFAHNELDRVDLRLLAP-KQLKFLDI 681
            L  IR  V+    N L  +   MF     ++ILD  +N +DR++     P   L  L++
Sbjct: 331 FLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLEL 390

Query: 682 SCNKKLQMDPSQFN 695
           S NK   +    FN
Sbjct: 391 SDNKLRTVGAQLFN 404



 Score = 40.7 bits (91), Expect = 7e-05
 Identities = 81/307 (26%), Positives = 134/307 (43%), Gaps = 26/307 (8%)

Query: 382 LDISHNSVEVLVLSS----LRGLRELYASHNALQHV---ALHGGS-LRILRAPHNQLESL 433
           LD+S N +  L  +S    LR L+EL+   NA+  +   AL G + LR   A +N L+SL
Sbjct: 217 LDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSL 276

Query: 434 TSTV--PPINLVEIDVSYNKLTLLPPWI-SGCSDLTTLHASNNQLTS-LPDHLFCXXXXX 489
              +     +L EI ++YN L  LP  I +    L  L+ + N+L S   D         
Sbjct: 277 PEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIR 336

Query: 490 XXXXXXAHNKISSIPS-MPRLRAPLKELLLHDNSIQSLPEN-FFSVCDXXXXXXXXXXXX 547
                 ++N ++ I + M +    L+ L L +NSI  +  N F  + +            
Sbjct: 337 LIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLR 396

Query: 548 XXXXXARCTSYCLEYLYLTANCLNDDATDVLIAFRG---LKILHLAYNCLTRLPEN---- 600
                     + L  L L+ N +   A+   +AFR    LK L L+ N LT +P+     
Sbjct: 397 TVGAQLFNGLFVLNRLTLSGNAI---ASIDPLAFRNCSDLKELDLSGNELTSVPDALRDL 453

Query: 601 CVNYWPDVEELVLSGNLFSRLPENMPQLNNIRVVRAHSNKLRSVPMFACSASVKILDFAH 660
            +    D+ E  +S N ++    N+ QL  +R++      L S  M     +++IL+ A 
Sbjct: 454 ALLKTLDLGENRIS-NFYNGSFRNLDQLTGLRLIGNDIGNL-SRGMLWDLPNLQILNLAR 511

Query: 661 NELDRVD 667
           N++  V+
Sbjct: 512 NKVQHVE 518



 Score = 28.3 bits (60), Expect = 0.40
 Identities = 54/250 (21%), Positives = 92/250 (36%), Gaps = 10/250 (4%)

Query: 445 IDVSYNKLTLLPPW--ISGCSDLTTLHASNNQLTSLPDHLFCXXXXXXXXXXXAHNKISS 502
           +D+S N++T L     +     L  LH   N +  +                 ++N + S
Sbjct: 217 LDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDAL-TGLTVLRTFNASYNSLDS 275

Query: 503 IPS-MPRLRAPLKELLLHDNSIQSLPENFFSVCDXXXXXXXXXXXXXXXXXARCTSYCLE 561
           +P  +      L+E+ L  N ++ LP+  F+  +                    T   L 
Sbjct: 276 LPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLI 335

Query: 562 YLY---LTANCLNDDATDVLIAFRGLKILHLAYNCLTRLPENCVNYWPDVEELVLSGNLF 618
            L    L+ N L      +      L+IL L  N + R+  N      ++  L LS N  
Sbjct: 336 RLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKL 395

Query: 619 SRLPENMPQ-LNNIRVVRAHSNKLRSV-PM-FACSASVKILDFAHNELDRVDLRLLAPKQ 675
             +   +   L  +  +    N + S+ P+ F   + +K LD + NEL  V   L     
Sbjct: 396 RTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLAL 455

Query: 676 LKFLDISCNK 685
           LK LD+  N+
Sbjct: 456 LKTLDLGENR 465



 Score = 26.6 bits (56), Expect = 1.2
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 574 ATDVLIAFRGLKILHLAYNCLTRLPENCVNYWPDVEELVLSGNLFSRLPENMPQLNNIRV 633
           A D  +  R L  L +  + +  LP N +    +++ L L+ N        +  +N+I +
Sbjct: 139 APDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTEN-------RLRDINDIGL 191

Query: 634 VRAHSNKL---RSVPMFACSASVKILDFAHNELDRV--DLRLLAPKQLKFLDISCN 684
            R  S+           +C A ++ILD + NE+ R+  +  LL  +QL+ L +  N
Sbjct: 192 NRRDSDDGSDGNDGDESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRN 247



 Score = 26.2 bits (55), Expect = 1.6
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 9/112 (8%)

Query: 375 DFPHLVCLDISHNSVEVLVLSS---LRGLRELYASHNALQHVA--LHGGS--LRILRAPH 427
           D   L  LD+ +NS++ +  ++   L  L  L  S N L+ V   L  G   L  L    
Sbjct: 357 DLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSG 416

Query: 428 NQLESLTSTV--PPINLVEIDVSYNKLTLLPPWISGCSDLTTLHASNNQLTS 477
           N + S+         +L E+D+S N+LT +P  +   + L TL    N++++
Sbjct: 417 NAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISN 468


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 402 ELYASHNALQHVALHGGS----LRILRAPHNQLES 432
           ++YA+H  L   A H GS     R++R  H+ +E+
Sbjct: 123 KIYANHCELHRAACHSGSSLTKSRLMRCLHHDIEN 157


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 336,774
Number of Sequences: 429
Number of extensions: 14240
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 1210
length of database: 140,377
effective HSP length: 66
effective length of query: 1144
effective length of database: 112,063
effective search space: 128200072
effective search space used: 128200072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)