GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002953-TA|BGIBMGA002953-PA|IPR013105|Tetratricopeptide
TPR_2, IPR000717|Proteasome component region PCI, IPR013586|26S
proteasome regulatory subunit, C-terminal, IPR013143|PCI/PINT
associated module
         (494 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   3.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   7.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 418 MSNKESSDIYCTREPQLAFHQRISFCLDL 446
           +S++ S D+YC     L++ +RI   LD+
Sbjct: 678 ISDRLSRDLYCGIRAGLSWLERIQIALDV 706


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 418 MSNKESSDIYCTREPQLAFHQRISFCLDL 446
           +S++ S D+YC     L++ +RI   LD+
Sbjct: 716 ISDRLSRDLYCGIRAGLSWLERIQIALDV 744


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 36   QDLREHIRQIDKAVTSKEPRFAMRVLRALPS 66
            ++LR ++R     +T  E RF  R+  A+PS
Sbjct: 1176 RELRPYLRTAAAILTWNEKRFWERLRYAIPS 1206


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,975
Number of Sequences: 429
Number of extensions: 4840
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 494
length of database: 140,377
effective HSP length: 60
effective length of query: 434
effective length of database: 114,637
effective search space: 49752458
effective search space used: 49752458
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)