GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002950-TA|BGIBMGA002950-PA|IPR002126|Cadherin
         (800 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   2.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   2.4  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   5.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 16/47 (34%), Positives = 18/47 (38%)

Query: 174  YSLVVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNVDED 220
            Y L VTA  ++G      E           AP  ELPD      DED
Sbjct: 1530 YHLRVTAHNNAGFAVAEYEFATLTVTGGTIAPARELPDVNGGGNDED 1576


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 514 SFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASD 555
           S +VE   +  N   F +QKYV+N K +  I  +ILR+   D
Sbjct: 331 SISVESNTMFINILKFLKQKYVKNSKLEKVIKHDILRMLIID 372


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 196 RVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILKVKAMDADSGKNAE 242
           R+  +NDN       D   ++ D D+ L  SI K+     D+ KN +
Sbjct: 63  RLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIRKIIRQCVDNAKNED 109


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 771 VNAIDKDGTFPNNQVHRLTLPEHRLRTTG 799
           ++ I+ +   P   +H L L +++LRT G
Sbjct: 371 IDRIESNAFLPLYNLHTLELSDNKLRTVG 399


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,297
Number of Sequences: 429
Number of extensions: 11652
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 800
length of database: 140,377
effective HSP length: 63
effective length of query: 737
effective length of database: 113,350
effective search space: 83538950
effective search space used: 83538950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)