GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002945-TA|BGIBMGA002945-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase,
IPR002424|Insect alcohol dehydrogenase family
         (274 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 219 LSSRAPVRQRVESAVKGILEVINKASTGDTWIVESDKPAY 258
           LS    VR  V  A K  +EVI  AS G T ++    P++
Sbjct: 118 LSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVPSF 157


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 219 LSSRAPVRQRVESAVKGILEVINKASTGDTWIVESDKPAY 258
           LS    VR  V  A K  +EVI  AS G T ++    P++
Sbjct: 118 LSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVPSF 157


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%)

Query: 81  LASAYKQVLDKYKRL----DGVINS 101
           + SAYK  +DK+ RL     G+IN+
Sbjct: 125 IVSAYKIAIDKFDRLWILDSGIINN 149


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 81  LASAYKQVLDKYKRL----DGVINSAAVL 105
           + SAYK  +DK+ RL     G+IN+  ++
Sbjct: 125 IVSAYKIAIDKFDRLWVLDSGLINNIQLM 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,765
Number of Sequences: 429
Number of extensions: 1773
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 274
length of database: 140,377
effective HSP length: 57
effective length of query: 217
effective length of database: 115,924
effective search space: 25155508
effective search space used: 25155508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)