GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002944-TA|BGIBMGA002944-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (270 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    46   4e-07
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 46.0 bits (104), Expect = 4e-07
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 45  KILEDELNDNYKGNKVKFYKCDVTS-NDLETVYDNVIKEHKYIDVVVNCAGI------MN 97
           K L +EL    K  K+   +CD+++ ND+  V + V K    ID+++N A I       N
Sbjct: 45  KTLVEELKS--KPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQN 102

Query: 98  DRPNVYLKEIAVNVTALITSSFKAYNLMRKDHGGKGGTIINISSIVGLFQASL---LPVY 154
           D    + K   +N+  L     +   LM+K  G   G I+NI+   GL    +    P Y
Sbjct: 103 DEVLDWKKIFDINLLGLTCMIQEVLKLMKKK-GINNGIIVNINDASGLNLLPMNRNRPAY 161

Query: 155 AATKSAVLQFSTCLGMEPHYSHSGVRVLTLCFGCTDTTL 193
            A+K A+   + CL  E     S ++V+++     +T +
Sbjct: 162 LASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDM 200


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 88  VVVNCAGIMNDRPNVYLKEIAVNV 111
           VVV  AGI+   P +Y   I ++V
Sbjct: 525 VVVGTAGIILQAPTLYDDRIPIDV 548


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,058
Number of Sequences: 429
Number of extensions: 2794
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 270
length of database: 140,377
effective HSP length: 57
effective length of query: 213
effective length of database: 115,924
effective search space: 24691812
effective search space used: 24691812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)