GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002943-TA|BGIBMGA002943-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (211 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    41   1e-05
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.70 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 6   DKIVSVTGGANGIGAFSVEVFIENQAKHVAIL-DIDTISGFKLEKHLNTTYGDGKVKFYK 64
           D++  VTG  +GIG   +E  +    K + I   +D +    L + L +    GK+   +
Sbjct: 7   DEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMK--TLVEELKSK--PGKLVPLQ 62

Query: 65  CDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLE 103
           CD+S  + +      V  + G ID+++NNA ++++ +L+
Sbjct: 63  CDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQ 101


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 114 KQEYFSKTGVR-VITVCYGPTDTDLVPLMINIDDSINPEIRSNIDAQKLQ 162
           K  +F   GV  +I  CYG  +  +    +     I+   +  ++ QKLQ
Sbjct: 250 KTTFFESCGVADLIATCYGGRNRKICEAFVKTGKKISELEKEMLNGQKLQ 299


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 135 TDLVPLMINIDDSINPEIRSNIDAQK 160
           TD+V L++  DD +  +   +I+  K
Sbjct: 217 TDIVVLVVAADDGVKEQTLQSIEMAK 242


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query: 128  VCYGPTDTDLV 138
            VCY P D D V
Sbjct: 1070 VCYSPNDEDFV 1080


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,778
Number of Sequences: 429
Number of extensions: 2352
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 211
length of database: 140,377
effective HSP length: 55
effective length of query: 156
effective length of database: 116,782
effective search space: 18217992
effective search space used: 18217992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)