GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002940-TA|BGIBMGA002940-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (272 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    85   5e-19
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.7  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    24   1.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   1.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 85.4 bits (202), Expect = 5e-19
 Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 13/202 (6%)

Query: 2   ESWKGKIVLITGAASGIGEGVVRLILERGVKHVAILDVAEDSGRALENELNTKYGPNCVK 61
           ++W  ++ L+TGA SGIG+ ++  ++ +G+K + I     D  + L  EL +K  P  + 
Sbjct: 3   QNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQV-DKMKTLVEELKSK--PGKLV 59

Query: 62  FYKCDVTVEELFLELFDTVKNEQGYLDVVINNAAI------MNDSYKSYKKQIDINVTAL 115
             +CD++ +   L++ + V+   G +D++INNA I       ND    +KK  DIN+  L
Sbjct: 60  PLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGL 119

Query: 116 VTGTLKAIEIMGKQNGGKGGTVLNI---SSVAALCQSHLFPIYFGTKSAVLQFSNCIGLE 172
                + +++M K+ G   G ++NI   S +  L  +   P Y  +K A+   ++C+  E
Sbjct: 120 TCMIQEVLKLM-KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSE 178

Query: 173 EHYAKSGVRVLSICFGATDTPL 194
               +S ++V+SI     +T +
Sbjct: 179 LAQCESNIKVISISPDLVETDM 200


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 79  TVKNEQGYLDVVINNAAIMNDSYKSYKK 106
           T+ N   Y +   NN    N++Y +YKK
Sbjct: 89  TIHNNNNYNNNNYNNYNYNNNNYNNYKK 116


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 234 AYEHAKSGDTWIITTNKPAKNITDTVK 260
           ++E +K+GD W  T++      T T K
Sbjct: 36  SFELSKNGDEWTFTSSSGDNTYTKTFK 62


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 234 AYEHAKSGDTWIITTNKPAKNITDTVK 260
           ++E +K+GD W  T++      T T K
Sbjct: 38  SFELSKNGDEWTFTSSSGDNTYTKTFK 64


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 49  NELNTKYGPNCVKFYKCDVTVEEL 72
           N  N  Y  NC K Y   + +E++
Sbjct: 341 NNYNNNYNNNCKKLYYNIINIEQI 364


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 115 LVTGTLKAIEIMGKQNGGKGGTVLNISSVAAL 146
           +VTG      ++G  NGG GG +   S ++A+
Sbjct: 30  VVTGASGGSIVVGANNGGGGGGLGIASGLSAM 61


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 61  KFYKCDVTVEELFLELFDTVKNEQGYLDVVINNAAIMNDS-YKSYKKQIDINV 112
           ++ K   T +E F +  +  ++++  +   ++N  I N++ YK+Y K++  N+
Sbjct: 288 EYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKLYYNI 340


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,436
Number of Sequences: 429
Number of extensions: 2964
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 272
length of database: 140,377
effective HSP length: 57
effective length of query: 215
effective length of database: 115,924
effective search space: 24923660
effective search space used: 24923660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)