GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002939-TA|BGIBMGA002939-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (223 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    85   7e-19
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   5.3  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   5.3  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   5.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   5.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 84.6 bits (200), Expect = 7e-19
 Identities = 52/194 (26%), Positives = 102/194 (52%), Gaps = 12/194 (6%)

Query: 1   MSHEWKDKVVFITGAATGIGESVVRILLDEGVKHIAILDIAEEAGQSLQAELNSKYGNKT 60
           M   W D+V  +TGA +GIG+ ++  L+ +G+K I I    ++  ++L  EL SK G K 
Sbjct: 1   MEQNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKM-KTLVEELKSKPG-KL 58

Query: 61  KFYRSDVTDEEHFLGILNAVVQEQGGIDVVINNA------ALMNDSIGIYKKAIEVNVTA 114
              + D++++   L ++  V +  G ID++INNA       L ND +  +KK  ++N+  
Sbjct: 59  VPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLG 118

Query: 115 LITSTLKAIEIMGKHSGGKGGTVINVSSVAALT---QSHVMPIYFATKSAVLQFSNCIGR 171
           L     + +++M K  G   G ++N++  + L     +   P Y A+K A+   ++C+  
Sbjct: 119 LTCMIQEVLKLM-KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRS 177

Query: 172 PEHFSKTGVRVLTV 185
                ++ ++V+++
Sbjct: 178 ELAQCESNIKVISI 191


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 92  NNAALMNDSIGIYKKAI 108
           N+A+L +++ GI+K+A+
Sbjct: 42  NSASLNSENFGIFKRAL 58


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 92  NNAALMNDSIGIYKKAI 108
           N+A+L +++ GI+K+A+
Sbjct: 43  NSASLNSENFGIFKRAL 59


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 92  NNAALMNDSIGIYKKAI 108
           N+A+L +++ GI+K+A+
Sbjct: 42  NSASLNSENFGIFKRAL 58


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 92  NNAALMNDSIGIYKKAI 108
           N+A+L +++ GI+K+A+
Sbjct: 42  NSASLNSENFGIFKRAL 58


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,220
Number of Sequences: 429
Number of extensions: 1900
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 223
length of database: 140,377
effective HSP length: 55
effective length of query: 168
effective length of database: 116,782
effective search space: 19619376
effective search space used: 19619376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)