GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002938-TA|BGIBMGA002938-PA|IPR012144|Nitric-oxide
synthase, IPR004030|Nitric oxide synthase, NOS,
IPR008254|Flavodoxin/nitric oxide synthase, IPR003097|FAD-binding,
IPR001433|Oxidoreductase FAD/NAD(P)-binding, IPR001709|Flavoprotein
pyridine nucleotide cytochrome reductase, IPR001094|Flavodoxin-like
         (1129 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...   578   e-167
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   2.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score =  578 bits (1427), Expect = e-167
 Identities = 276/553 (49%), Positives = 374/553 (67%), Gaps = 5/553 (0%)

Query: 568  GSVAGASSIEQIGPLSNVCFAVFGLGSSAYPKFCHFGKTVDKILGDLGGERILELACGDE 627
            GS   + + +  GPLSNV FAVF LGSSAYP FC FG+ VD +LG+LGGER+L+LA GDE
Sbjct: 587  GSTTDSQTEDNFGPLSNVRFAVFALGSSAYPNFCAFGRYVDNLLGELGGERLLKLAQGDE 646

Query: 628  LYGQEQQFRAWSSKIFQVACETFCLDENDMVKDAKKALGDVPLTEETVRFGKYQGDTKLK 687
            + GQEQ FR W++  F VACETFCLD++D + +   +LG   L+  TVRF + +    + 
Sbjct: 647  MCGQEQAFRKWAADTFAVACETFCLDDDDTLLEVALSLGSEALSAATVRFIEAEPQP-IG 705

Query: 688  AALEASFRKQLITCKVKENKNLGDFSADRATVFVDMQP--ETEFKYDPGDHVGVLACNRK 745
             AL     + + TC +    NL   S+   T+ +++      E  Y PGDH+GV ACNR 
Sbjct: 706  KALSKCHNRNVTTCNMFRKTNLSGDSSSGTTLLLELDDIASMEILYKPGDHLGVFACNRS 765

Query: 746  EIVDAVLERMKDVDDYDKTVQLQVMKETLTPTGAIKTWEQHERLPAVTIRQIFTRFLDIT 805
            E+V+A+L+R++   D D  ++LQ+ K++ TP G +KTW  H+R    ++R +  RFLDIT
Sbjct: 766  ELVEAILKRVQTPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLPNSLRILLKRFLDIT 825

Query: 806  TPPSTTVLKYLSKACTDQNDAAQLKELAIDSNKYDDWRHLHYPHLAEVLAQFPSCRXXXX 865
            TPP+  +L+Y +   T+  + AQL  LA D   Y+DWRH  +P+L EVL +FPS R    
Sbjct: 826  TPPTPNLLRYFASIATNPKEQAQLNLLASDPAVYEDWRHWKFPNLVEVLDEFPSVRPFAP 885

Query: 866  XXXXXXXXXXXRFYSISSSPLAHPHRIHITCAVVVYRTQNGQGPMHYGVCSTYLQNLKPE 925
                       RFYSISSSP  H  +IH+T AVV Y+TQ+G GP+HYGVCS YL+ +   
Sbjct: 886  LLLLHLTPLQPRFYSISSSPDVHQGQIHLTVAVVQYKTQDGFGPIHYGVCSNYLREISDG 945

Query: 926  DEALVFIRRAPSFHMPKDLSAPLILVGPGSGIAPFRGFWHHRKHQIKNLIPNKQKPGPVW 985
            +   VF+R AP+F+MP +  AP+ILVGPG+GIAPFRGFWHHR  +IK   P+ +  G VW
Sbjct: 946  EPLYVFVRSAPNFYMPSEPKAPMILVGPGTGIAPFRGFWHHRLAEIKRR-PDLEY-GKVW 1003

Query: 986  LFFGCRNRGMDLYKEEKEKALADGVLSKVFLALSREDSVEKKHIQTLLEDEGAEISRMLL 1045
            LFFGCR R +DLY++EKE+ +  GVL K+FLALSRE   +K ++Q L++ E ++I  ML+
Sbjct: 1004 LFFGCRQRNLDLYRQEKEEMVELGVLDKIFLALSRESGFKKTYVQDLIQAEASQIYDMLV 1063

Query: 1046 DENGHFYVCGDCKMAEEVQQKLKEIMKKHAKMTEQEYEEFILNLMDENRYHEDIFGITLR 1105
             E GHFYVCGDC MAE+V Q LK I++ H +MT+++ E ++L+L DENRYHEDIFGITLR
Sbjct: 1064 YEGGHFYVCGDCTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLRDENRYHEDIFGITLR 1123

Query: 1106 TAEVQSASREFAK 1118
            TAEV + SRE A+
Sbjct: 1124 TAEVHNRSRETAR 1136



 Score =  525 bits (1295), Expect = e-151
 Identities = 230/344 (66%), Positives = 278/344 (80%)

Query: 4   TKCSEKVCQTSIMDIPGRGDTPRTAEEVFKDAQAFLTQYYASIKRENSEAHKARLDEVKR 63
           T CS +VC  S+M +P  G  PR+ EE+   A+ FL QY++SI+R NSEAH+ R + V++
Sbjct: 38  TLCSGQVCLGSVMQLPIHGTEPRSKEEILLHAKDFLEQYFSSIRRLNSEAHRIRWESVQK 97

Query: 64  ELKEKGTYQLKTSELVFGAKLAWRNATRCIGRIQWKKLQIFDCREVTTASGMFEALCNHI 123
           E+   GTYQL  +ELVFGAKLAWRNATRCIGRIQW KLQ+FDCR VTT SGMFEALCNHI
Sbjct: 98  EVTVTGTYQLTETELVFGAKLAWRNATRCIGRIQWSKLQVFDCRYVTTTSGMFEALCNHI 157

Query: 124 KYATNKGNIRSAITIFPQRTDGKHDYRIWNPQLINYAGYQEPDGSIIGDPARVEFTEICM 183
           KY+TNKGNIRSAITIFPQRTDGKHDYR+WN QLI+YAGY+ PDG+IIGDPA +EFTE+CM
Sbjct: 158 KYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLISYAGYKNPDGTIIGDPANIEFTELCM 217

Query: 184 KLGWKAPRTPWDILPLVLSADGKDPEFFELPKEIVMEVQFEHPEYDWFKDMGWKWYALPA 243
           KLGWK+ RT +DILPL+LSA+G DP++F++P E+V+EV   HP YDWF+ +  KW+A+PA
Sbjct: 218 KLGWKSARTRFDILPLILSANGHDPDYFDIPNELVLEVPLSHPTYDWFEKLELKWFAVPA 277

Query: 244 VSNMRLDCGGLEFTANSFNGWYMGTEIGCRNLCDESRLNIVEAVAKKMGLDTNSFVSLWK 303
           VS M  DCGGLEFTA  FNGWYM TEIG R+LCD  R N++E +A  MGLDT +  SLWK
Sbjct: 278 VSGMVFDCGGLEFTAAPFNGWYMSTEIGSRDLCDVQRYNLLETIATHMGLDTRTSTSLWK 337

Query: 304 DKALVEVNIAVLHSFHRDNVSIVDHHSASEQFQKHLENENKSRN 347
           DKA++E N+AVLHSF   NV+IVDHH+ASE F KH ENE + RN
Sbjct: 338 DKAMIEANVAVLHSFQMKNVTIVDHHTASESFMKHYENEMRLRN 381



 Score =  251 bits (615), Expect = 2e-68
 Identities = 114/176 (64%), Positives = 139/176 (78%), Gaps = 4/176 (2%)

Query: 396 LRGGCPADWIWIVPPMSSSLTTVFHQEMALYYIRPSYDYQEPPWKTHQWTKSDGTKTV-- 453
           LR GCPADW+WIVPP+S S T VFHQEMALYY++PSYD QEP WKTH W K    K+   
Sbjct: 379 LRNGCPADWLWIVPPISGSATPVFHQEMALYYLKPSYDAQEPAWKTHVWKKGRDKKSTSK 438

Query: 454 --HRKFHFKQIARAVKFTSKLFGRALSKRIKATILYATETGKSEHYAKELGTIFGHAFNA 511
              RKFHFKQIARAVKFTSKLFGRALS+RIKAT+L+ATETG S+ YA++L  + GHAF++
Sbjct: 439 KPRRKFHFKQIARAVKFTSKLFGRALSRRIKATVLFATETGTSQMYAEKLSELLGHAFHS 498

Query: 512 QVHCMSEYDMFSIEHETLVLIVASTFGNGEPPANGVDFAEHLFQMLYNETNNNRGD 567
           QV  MS+YD+ +IEHE L+L++ STFGNG+PP NG  FA++L+ M  NET  N G+
Sbjct: 499 QVLSMSDYDISNIEHEALLLVITSTFGNGDPPENGEAFAQNLYAMKMNETYINSGN 554


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 121 NHIKYATNKGNIRSAITIFPQRTDGKH-DYRIWNPQLINYAGYQEP--DGSIIGDPARVE 177
           NH+K     G ++   T  P     KH   RI +  L+      +P     I GD   V 
Sbjct: 102 NHLKQL---GYVQKLDTWVPHELKEKHLTQRINSCDLLKKRNENDPFLKRLITGDEKWVV 158

Query: 178 FTEICMKLGWKAPRTP 193
           +  I  K  W  PR P
Sbjct: 159 YNNIKRKRSWSRPREP 174


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,998
Number of Sequences: 429
Number of extensions: 14159
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 1129
length of database: 140,377
effective HSP length: 65
effective length of query: 1064
effective length of database: 112,492
effective search space: 119691488
effective search space used: 119691488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)