GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002937-TA|BGIBMGA002937-PA|IPR012144|Nitric-oxide
synthase, IPR004030|Nitric oxide synthase, NOS,
IPR008254|Flavodoxin/nitric oxide synthase, IPR003097|FAD-binding,
IPR001433|Oxidoreductase FAD/NAD(P)-binding, IPR001709|Flavoprotein
pyridine nucleotide cytochrome reductase, IPR001094|Flavodoxin-like
         (1097 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...  1466   0.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   5.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 1466 bits (3633), Expect = 0.0
 Identities = 686/1105 (62%), Positives = 845/1105 (76%), Gaps = 19/1105 (1%)

Query: 1    MAIPGRGDVPRDPEEVLNDAKDFLGQYFASIRRANTPAHEARWKIVQEEVAXXXXXXXXX 60
            M +P  G  PR  EE+L  AKDFL QYF+SIRR N+ AH  RW+ VQ+EV          
Sbjct: 50   MQLPIHGTEPRSKEEILLHAKDFLEQYFSSIRRLNSEAHRIRWESVQKEVTVTGTYQLTE 109

Query: 61   XELVFGAKLAWRNASRCIGRIQWSKLQVFDCRQVTTTSGMFEALCNHIKYSTNKGNIRSA 120
             ELVFGAKLAWRNA+RCIGRIQWSKLQVFDCR VTTTSGMFEALCNHIKYSTNKGNIRSA
Sbjct: 110  TELVFGAKLAWRNATRCIGRIQWSKLQVFDCRYVTTTSGMFEALCNHIKYSTNKGNIRSA 169

Query: 121  ITLFPQRTDGKHDYRIWNSQLISYAGYRQPDGTVLGDPMHCEFTDLCLKLGWKPPRTAWD 180
            IT+FPQRTDGKHDYR+WN QLISYAGY+ PDGT++GDP + EFT+LC+KLGWK  RT +D
Sbjct: 170  ITIFPQRTDGKHDYRVWNHQLISYAGYKNPDGTIIGDPANIEFTELCMKLGWKSARTRFD 229

Query: 181  ILPLVLSANGKDPDYFEIPRELVMEIHMTHPTFEWFKELELRWYALPAVSSMRFDCGGIE 240
            ILPL+LSANG DPDYF+IP ELV+E+ ++HPT++WF++LEL+W+A+PAVS M FDCGG+E
Sbjct: 230  ILPLILSANGHDPDYFDIPNELVLEVPLSHPTYDWFEKLELKWFAVPAVSGMVFDCGGLE 289

Query: 241  FTANAFNGWYMSTEIGCRNFCDTNRLNVLEKIAQNMGLDTRTPVNLWKDKALVEVNVAVL 300
            FTA  FNGWYMSTEIG R+ CD  R N+LE IA +MGLDTRT  +LWKDKA++E NVAVL
Sbjct: 290  FTAAPFNGWYMSTEIGSRDLCDVQRYNLLETIATHMGLDTRTSTSLWKDKAMIEANVAVL 349

Query: 301  HSFQQHNATIVDHHTASESFIKHLDNENRLRSGCPADWIWIVPPMSSSITPVFHQEMALY 360
            HSFQ  N TIVDHHTASESF+KH +NE RLR+GCPADW+WIVPP+S S TPVFHQEMALY
Sbjct: 350  HSFQMKNVTIVDHHTASESFMKHYENEMRLRNGCPADWLWIVPPISGSATPVFHQEMALY 409

Query: 361  YLKPSYEYQEPAWKTHQWQK--SKPITGKRPINRKFHFKQIARAVKFTSKLFGRALSKRI 418
            YLKPSY+ QEPAWKTH W+K   K  T K+P  RKFHFKQIARAVKFTSKLFGRALS+RI
Sbjct: 410  YLKPSYDAQEPAWKTHVWKKGRDKKSTSKKP-RRKFHFKQIARAVKFTSKLFGRALSRRI 468

Query: 419  KATVLYATETGKSEQYAKELGVIFGHAFNAQVHCMADYDITSIEHEALLLVVTSTFGNGD 478
            KATVL+ATETG S+ YA++L  + GHAF++QV  M+DYDI++IEHEALLLV+TSTFGNGD
Sbjct: 469  KATVLFATETGTSQMYAEKLSELLGHAFHSQVLSMSDYDISNIEHEALLLVITSTFGNGD 528

Query: 479  PPENGVAFGEHLCEILYADQVGED--STGNQ--MLTPKSFIKANSDIQRYTAGNPKKLNR 534
            PPENG AF ++    LYA ++ E   ++GN+  + T KSFIKANS  +     N KKL+R
Sbjct: 529  PPENGEAFAQN----LYAMKMNETYINSGNKISLATSKSFIKANSQTE---VSNSKKLDR 581

Query: 535  LESLKGSTTDATSIDSFGPLSNVRFAVFALGSSAYPNFCNFGKYVDKLLVDLGGERIHDL 594
            L+SL+GSTTD+ + D+FGPLSNVRFAVFALGSSAYPNFC FG+YVD LL +LGGER+  L
Sbjct: 582  LDSLRGSTTDSQTEDNFGPLSNVRFAVFALGSSAYPNFCAFGRYVDNLLGELGGERLLKL 641

Query: 595  ATGDEMCGQDQAFRKWASSVFNVACETFCLDDDETLQEAKRALGTVALSEETVQFARAGC 654
            A GDEMCGQ+QAFRKWA+  F VACETFCLDDD+TL E   +LG+ ALS  TV+F  A  
Sbjct: 642  AQGDEMCGQEQAFRKWAADTFAVACETFCLDDDDTLLEVALSLGSEALSAATVRFIEA-- 699

Query: 655  RPATLHAALQKSLNKQFVSCTVKANKDLGDASAERSTIFIDLE--PKEEIKYNPGDHVGI 712
             P  +  AL K  N+   +C +    +L   S+  +T+ ++L+     EI Y PGDH+G+
Sbjct: 700  EPQPIGKALSKCHNRNVTTCNMFRKTNLSGDSSSGTTLLLELDDIASMEILYKPGDHLGV 759

Query: 713  IACNRKELVESLLSRIKDVDDYDEPLQLQLLKETHTSSGLVKSWEPHEKLPIMSVRELFT 772
             ACNR ELVE++L R++   D D P++LQ+ K++HT +G+VK+W  H++    S+R L  
Sbjct: 760  FACNRSELVEAILKRVQTPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLPNSLRILLK 819

Query: 773  RFLDXXXXXXXXXXQYLATTCEDEEEKKQLNVLATDPGAYEDWRHFHFPTLPEVLDQFXX 832
            RFLD          +Y A+   + +E+ QLN+LA+DP  YEDWRH+ FP L EVLD+F  
Sbjct: 820  RFLDITTPPTPNLLRYFASIATNPKEQAQLNLLASDPAVYEDWRHWKFPNLVEVLDEFPS 879

Query: 833  XXXXXXXXXXXXXXXXXRFYSISSSPLAHAKRLHLTVAVVTYRTQDGEGPVHYGVCSNYL 892
                             RFYSISSSP  H  ++HLTVAVV Y+TQDG GP+HYGVCSNYL
Sbjct: 880  VRPFAPLLLLHLTPLQPRFYSISSSPDVHQGQIHLTVAVVQYKTQDGFGPIHYGVCSNYL 939

Query: 893  MERKPGDEVYLFIRSAPNFHLPQDLSVPLILIGPGTGIAPFRGFWHHRRALQNSCSRTTT 952
             E   G+ +Y+F+RSAPNF++P +   P+IL+GPGTGIAPFRGFWHHR A          
Sbjct: 940  REISDGEPLYVFVRSAPNFYMPSEPKAPMILVGPGTGIAPFRGFWHHRLAEIKRRPDLEY 999

Query: 953  GPVWLFFGCRTKTMDLYREEKEQALKEGVLSKVFLALSREKEVPKTYVQEVAENVGAEIH 1012
            G VWLFFGCR + +DLYR+EKE+ ++ GVL K+FLALSRE    KTYVQ++ +   ++I+
Sbjct: 1000 GKVWLFFGCRQRNLDLYRQEKEEMVELGVLDKIFLALSRESGFKKTYVQDLIQAEASQIY 1059

Query: 1013 DLLINKGAHFYVCGDCKMAEDVHQKLKGIVKKHGNMTDEQVQNFMFMLKEENRYHEDIFG 1072
            D+L+ +G HFYVCGDC MAEDV+Q LK I++ HG MTD+QV+ +M  L++ENRYHEDIFG
Sbjct: 1060 DMLVYEGGHFYVCGDCTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLRDENRYHEDIFG 1119

Query: 1073 ITLRTAEVHSASRESARRNRVASQP 1097
            ITLRTAEVH+ SRE+A RNR+A++P
Sbjct: 1120 ITLRTAEVHNRSRETA-RNRMAAEP 1143


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 114 KGNIRSAITLFPQRTDGKHDYRIWNSQLISYAG 146
           K  + S  T    RT   +D+ +WNS + S  G
Sbjct: 450 KSILESGTTTLQTRTMHPYDHLVWNSWMPSIRG 482


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 313,483
Number of Sequences: 429
Number of extensions: 13037
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 1097
length of database: 140,377
effective HSP length: 65
effective length of query: 1032
effective length of database: 112,492
effective search space: 116091744
effective search space used: 116091744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)