GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002935-TA|BGIBMGA002935-PA|undefined
         (102 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    31   0.003
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   5.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   5.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   5.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   6.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    19   9.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
          protein.
          Length = 1143

 Score = 31.1 bits (67), Expect = 0.003
 Identities = 12/24 (50%), Positives = 19/24 (79%)

Query: 60 KKPCKLRNVASKAESYDTLYANSS 83
          KKP KLRN+  K E++D+L+A ++
Sbjct: 12 KKPTKLRNLIYKTEAFDSLHAGNA 35


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 4   QLGNFTKNNLTHNSKLVKERENKS 27
           QLGN TK+       L+ +  +KS
Sbjct: 112 QLGNLTKHLQVFRDHLINQIPDKS 135


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 78  LYANSSLCFRLLPNIFLLVTH 98
           LY  S + F L+P +F+ V +
Sbjct: 205 LYQLSCILFFLIPMVFIAVLY 225


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
          determiner protein.
          Length = 418

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 8  FTKNNLTHNSKLVKERENKSS 28
          + K + TH  KLV ER    S
Sbjct: 67 YIKYSHTHEKKLVLERSKTKS 87


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 61  KPCKLRNVASKAESYDTL 78
           +P K RN+   A++ DTL
Sbjct: 331 RPLKRRNIEIVAKNNDTL 348


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 2   FEQLGNFTKNNLTHNSKLVKERENKSSANHVXXXXXXXXNQNPSPSHKHVLAQPSLPLKK 61
           + + G  +K    + ++  K +E K  ++          N N  P H ++     +P+  
Sbjct: 289 YRKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLHYNINYIEQIPVPV 348

Query: 62  P 62
           P
Sbjct: 349 P 349


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,458
Number of Sequences: 429
Number of extensions: 1021
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 102
length of database: 140,377
effective HSP length: 49
effective length of query: 53
effective length of database: 119,356
effective search space:  6325868
effective search space used:  6325868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)