GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002933-TA|BGIBMGA002933-PA|IPR005606|Sec20
         (246 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.039
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.49 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 8   SPTDPYHQSLFAKLENPDVVYQNFVKRLAKYHF 40
           +PTD Y +S F  L+NP V  + F+   A   F
Sbjct: 540 TPTDSYIRSFFELLQNPKVSNEQFLNTAATLSF 572


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 93  DTELESQRHLLACLLKEFKDANINSMLAIEKAQREDLLKCSDNEKSSV-------RQRKK 145
           DTE  +Q  + +   KE  D    + + +++  R DL +C + EKS+V       ++RKK
Sbjct: 71  DTEKLNQLEIESDNSKEVNDKKEENFI-VDRL-RNDLFECENKEKSNVCLKFEEQKRRKK 128

Query: 146 KMD 148
            +D
Sbjct: 129 SLD 131


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 55  SMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELESQRHLL 103
           S E+  +  E+ R+K  ++   L N Y Y        Y+ +L  + +++
Sbjct: 63  SKERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYII 111


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 28  YQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREEL 77
           ++ F + +   H+QVKA+++ +++ + S   +         K  E  EEL
Sbjct: 254 FEYFTRTIPSDHYQVKAMVEIVMKMKWSYVSIIYEESNYGIKAFEELEEL 303


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 55  SMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYD 93
           S E+  +  E+ R+K  ++   L N Y Y        Y+
Sbjct: 296 SKERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYN 334


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,711
Number of Sequences: 429
Number of extensions: 2125
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 246
length of database: 140,377
effective HSP length: 56
effective length of query: 190
effective length of database: 116,353
effective search space: 22107070
effective search space used: 22107070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)