GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002932-TA|BGIBMGA002932-PA|IPR013112|FAD-binding 8,
IPR001433|Oxidoreductase FAD/NAD(P)-binding
         (259 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.032
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   4.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   4.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 203  DEKTTLLTPNKRSPYTKAESRNSCDVIKEYPVLGCRVLRGRPYWD 247
            DE   +  PN++ P     + N+CD IK   V+  R +R    WD
Sbjct: 1641 DELGYIAPPNRKLPPVPGSNYNTCDRIKRGTVI--RSIRSHSTWD 1683


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 101  ICVAAGVGITPFVPVLHHMLQNPRSRFPGRVHLIWI 136
            I V  G GI PF    HH L   + R       +W+
Sbjct: 969  ILVGPGTGIAPFRGFWHHRLAEIKRRPDLEYGKVWL 1004


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 150 ANKTILQLRTANRPDRLHLELYVTKD 175
           +N+TI Q+      + L  E+++TKD
Sbjct: 23  SNETIAQVTDDENCETLQSEVHITKD 48


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 150 ANKTILQLRTANRPDRLHLELYVTKD 175
           +N+TI Q+      + L  E+++TKD
Sbjct: 23  SNETIAQVTDDENCETLQSEVHITKD 48


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 136 IVRSENELAWLADLANKTILQLRTANRPDRLHLELYVTKDN 176
           I+R+  E +W +  A+ ++ Q      P+ + L+ Y    N
Sbjct: 147 IIRTPTEASWHSPEAHISVAQKLQKEIPNSIILDQYTNPGN 187


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 163  PDRLHLELYVTKDNVQTKAHTVSIDEKGSLTH 194
            P ++ L++   K N+Q K   +  +EK  L H
Sbjct: 1004 PLKISLDVNTPKGNMQWKIWPMKGEEKSRLFH 1035


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,457
Number of Sequences: 429
Number of extensions: 3443
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 259
length of database: 140,377
effective HSP length: 56
effective length of query: 203
effective length of database: 116,353
effective search space: 23619659
effective search space used: 23619659
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 43 (21.4 bits)