GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002931-TA|BGIBMGA002931-PA|IPR012958|CHD, N-terminal,
IPR001965|Zinc finger, PHD-type, IPR000953|Chromo,
IPR000330|SNF2-related, IPR001650|Helicase, C-terminal,
IPR009463|Protein of unknown function DUF1087, IPR009462|Protein of
unknown function DUF1086, IPR012957|CHD, C-terminal 2,
IPR014001|DEAD-like helicases, N-terminal, IPR014021|Helicase
superfamily 1 and 2 ATP-binding, IPR002464|ATP-dependent helicase,
DEAH-box, IPR010254|B12-dependent dehydratases, beta subunit,
IPR011011|Zinc finger, FYVE/PHD-type, IPR009071|High mobility group
box
         (1969 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       36   0.002
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   6.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   8.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 1055 LLSKMLKQLKEQGHR--VLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDR 1112
            LL ++L++  + G     L+F +M K  D +  FL    Y    I G      R+EA+  
Sbjct: 437  LLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALAD 496

Query: 1113 FNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANK 1169
            F    + +   L++T     G+++     VI YD        +    R  R+G   +
Sbjct: 497  FK---SGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGR 550


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine receptor
            protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 1829 SLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSRLPATLA 1888
            S N R A     + S    +K + A  +P+     +  N+ E  L  +KS VS LP  LA
Sbjct: 512  SPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGET-NKQE--LKRLKSTVSLLPLPLA 568

Query: 1889 RIPPV 1893
            R P V
Sbjct: 569  RTPSV 573


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 113 NTPSTTTASDSGSGMPTVEEVCSSFGLTDVDIQ 145
           NTP+T+  S SG+ +P      SS  +  + ++
Sbjct: 840 NTPTTSVISMSGTTVPITSLPASSTSINSITVE 872


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,980
Number of Sequences: 429
Number of extensions: 19156
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 6
length of query: 1969
length of database: 140,377
effective HSP length: 68
effective length of query: 1901
effective length of database: 111,205
effective search space: 211400705
effective search space used: 211400705
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)