GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002930-TA|BGIBMGA002930-PA|undefined
         (438 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    25   1.3  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    24   2.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   6.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.9  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 131 NSTDFDKKMNRLIACVCQKIGIDTGDRLNV 160
           NS +  KK+    ACV QK+    G+ LNV
Sbjct: 44  NSEEQMKKLGCFEACVFQKLHFMDGNTLNV 73


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 131 NSTDFDKKMNRLIACVCQKIGIDTGDRLNV 160
           NS +  KK     ACV QK+    G+ LNV
Sbjct: 44  NSEEQMKKFGCFEACVFQKLHFMDGNTLNV 73


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 64  SNNWNNVELRDNRYNH 79
           +NN+NN    +N YN+
Sbjct: 98  NNNYNNYNYNNNNYNN 113


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 139 MNRLIACVCQKIGIDTGDRLNVNSKKRKFLIKAPLAPDSE 178
           ++ +++ V   + I TG+ L    K  K    A + PDS+
Sbjct: 58  LSAMLSLVVVTVAISTGEWLLTEEKLPKTSSNASVEPDSK 97


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,188
Number of Sequences: 429
Number of extensions: 5913
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 438
length of database: 140,377
effective HSP length: 60
effective length of query: 378
effective length of database: 114,637
effective search space: 43332786
effective search space used: 43332786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)