GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002926-TA|BGIBMGA002926-PA|IPR001478|PDZ/DHR/GLGF
         (589 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   4.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   7.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   9.3  

>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 379 EPSVALRRKEFENKTARREARSLDVQPQQDIETEATIGGSLSGNQLMITGSK 430
           E SV+      E  T R  A+   +    D  TE TIGG  + +    TGS+
Sbjct: 251 EESVSSETNHNERSTPRSHAKPSLID---DEPTEVTIGGGGTTSSRRTTGSR 299


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
          protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 26 VLAVNGEPVACGRSRAPYARVVQLAQREPRILRLTVVPRDHDLLQRYFSEAAYNRET-NQ 84
          V+AV G       +R    R     + EP   R   +P+      R   EA    E  N 
Sbjct: 14 VVAVFGNTNLDPPTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPKAEPGNN 73

Query: 85 RPLDMPAPVAEHERL 99
          RP+ +P P   H RL
Sbjct: 74 RPIYIPQPRPPHPRL 88


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 308 TNGQNGLTNGSANGKVNIKEELENNQDN 335
           TN QN   N   N K N   +  NNQ++
Sbjct: 426 TNNQND--NNQKNNKKNANNQKNNNQND 451


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,031
Number of Sequences: 429
Number of extensions: 5157
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 589
length of database: 140,377
effective HSP length: 61
effective length of query: 528
effective length of database: 114,208
effective search space: 60301824
effective search space used: 60301824
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)