GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002920-TA|BGIBMGA002920-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (268 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    99   4e-23
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   3.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   3.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 99.1 bits (236), Expect = 4e-23
 Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 22/191 (11%)

Query: 33  PAIFVIAIGVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVS 92
           P+I +I +G I+  +S FGC GA++ES C+   FA  L  + +++IA A+ A+ +     
Sbjct: 51  PSITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDD 110

Query: 93  QF--LDKKLREALPLYYQHAEAQDAFDFIQYELNCCGVDSYMDWHAVDPPTGGTGISFAN 150
            F  + +K +E    Y+ ++E++D  DFIQ  L CCGV S  D++  D P          
Sbjct: 111 NFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYN--DKP---------- 158

Query: 151 LTVPDSCCAQSHMTVVGEETIVECHKIYANGCLPRVYYLVNQSAGLLGAGALTICFIQII 210
             +P SCC         E         Y NGC+  +   V  +  + G+ A+ I  +++I
Sbjct: 159 --IPASCCNSP------ENNTCSISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELI 210

Query: 211 GIVFSFSLASS 221
           GI+ +  LA+S
Sbjct: 211 GIICALCLANS 221


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 174 CHKIYANGCLPRVYYLVNQ 192
           C KI A GC+ R+ YL N+
Sbjct: 63  CIKICAPGCVCRLGYLRNK 81


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 174 CHKIYANGCLPRVYYLVNQ 192
           C KI A GC+ R+ YL N+
Sbjct: 63  CIKICAPGCVCRLGYLRNK 81


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,944
Number of Sequences: 429
Number of extensions: 2114
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 268
length of database: 140,377
effective HSP length: 57
effective length of query: 211
effective length of database: 115,924
effective search space: 24459964
effective search space used: 24459964
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)