GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002919-TA|BGIBMGA002919-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (222 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    53   2e-09
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 15/171 (8%)

Query: 54  GAFMENYLMNMAFAGAMILMFVFQLSACIAGYALKSN--TVALVQKQLLSTMELYGPASL 111
           GA  E++ M + FA  ++ + + Q++  +  + +  N      + ++       Y   S 
Sbjct: 72  GAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNS- 130

Query: 112 EITKLWDEVQGDFECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTVEAYP 171
           E     D +Q + +CCGV + SD+         + +P SCC+    + +   C+   +Y 
Sbjct: 131 ESKDFIDFIQKNLQCCGVHSLSDY-------NDKPIPASCCN----SPENNTCSISNSYT 179

Query: 172 TGCAEAFGNWVQSHAAAIGAAGIFLVLMQALAVAGAVWMA-KISREERGAY 221
            GC EA  + V+      G+  I + +++ + +  A+ +A  I   ER  Y
Sbjct: 180 NGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAERRGY 230


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 54  GAFMENYLMNMAFAGA 69
           G F +NYL+N++F  A
Sbjct: 368 GVFYKNYLLNVSFIDA 383


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 54  GAFMENYLMNMAFAGA 69
           G F +NYL+N++F  A
Sbjct: 458 GVFYKNYLLNVSFIDA 473


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,652
Number of Sequences: 429
Number of extensions: 2103
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 222
length of database: 140,377
effective HSP length: 55
effective length of query: 167
effective length of database: 116,782
effective search space: 19502594
effective search space used: 19502594
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)