GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002918-TA|BGIBMGA002918-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
         (186 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 84  YEGGVFFLDIHFSPEYPFK 102
           ++G +F   I F P YPF+
Sbjct: 305 FDGRLFEFPIKFVPSYPFE 323


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 72 WVSTILGPPGSVYEGGV 88
          W    LG PGS   GGV
Sbjct: 14 WCCDNLGGPGSSSAGGV 30


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,979
Number of Sequences: 429
Number of extensions: 2575
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 186
length of database: 140,377
effective HSP length: 54
effective length of query: 132
effective length of database: 117,211
effective search space: 15471852
effective search space used: 15471852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)