GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002916-TA|BGIBMGA002916-PA|undefined
         (178 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.24 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 92  EIPVQTEIDSVKNDSSAITLECDMKMLSPMTLSPKSVED 130
           EIP++ E    +N+S      C++   SP T+ P+++ D
Sbjct: 338 EIPLEEEEWENENESDYQDAFCNIVSCSPQTVHPETIID 376



 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)

Query: 45  QHSYAHPYTHAADLLEIKEENNDKGDIFYA 74
           +HSY H  T    LL I ++    GDI Y+
Sbjct: 128 KHSYVHTITVPNKLLRISQD----GDILYS 153


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 110 TLECDMKMLSPMTLSP 125
           TL+ D KML+P+   P
Sbjct: 245 TLDIDHKMLTPIKSEP 260


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,205
Number of Sequences: 429
Number of extensions: 1764
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 178
length of database: 140,377
effective HSP length: 54
effective length of query: 124
effective length of database: 117,211
effective search space: 14534164
effective search space used: 14534164
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)