GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002914-TA|BGIBMGA002914-PA|IPR008153|Gamma-adaptin,
C-terminal, IPR002553|Adaptin, N-terminal, IPR008152|Alpha/gamma
adaptin, C-terminal
         (840 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   7.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 601 RMPAMEPVAAPHRDEQELDLSDTSPDHTKPDQDALLDLINGSDSLTNGDVEHQPEQIATT 660
           + PA      P    Q+LD     P     + +      NGS+S +N DV  +  +    
Sbjct: 109 KRPASPGYVQPPTKHQKLDQKFIFPQENNYNDNYFYSKSNGSNS-SNSDVLFKQNKEEEQ 167

Query: 661 NNNTSSNDILD 671
             N  ++D LD
Sbjct: 168 TINRKNSDYLD 178


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 277 NTET---SKNVGNTILYETVLSIMDIKSESSLRVLAVNILGRFLLNND 321
           NTE+   S+N GN + YE V  + D  S+ +++ ++ N +  F L N+
Sbjct: 278 NTESLMKSENQGNDVQYERVQDVFD--SQLTVKAVSKNGVLLFGLANN 323


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 300 KSESSLRVLAVNILGRFLLNNDKNIRYVALN 330
           K  + LR  A+N++  F +  + NI+Y ALN
Sbjct: 86  KEYNMLRTTAINVIRHFGIVGECNIQY-ALN 115


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,087
Number of Sequences: 429
Number of extensions: 7410
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 840
length of database: 140,377
effective HSP length: 64
effective length of query: 776
effective length of database: 112,921
effective search space: 87626696
effective search space used: 87626696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)