GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002913-TA|BGIBMGA002913-PA|IPR006688|ADP-ribosylation
factor, IPR006689|ARF/SAR superfamily, IPR005225|Small GTP-binding
protein domain, IPR006687|GTP-binding protein SAR1, IPR003579|Ras
small GTPase, Rab type, IPR001806|Ras GTPase
         (203 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 195  PPRNHDDN 202
            PPRNHD N
Sbjct: 1863 PPRNHDQN 1870


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 75  DLGGQQELQSLWDKYYAECHAVI 97
           DLG +  L++ W +     HA I
Sbjct: 379 DLGKEGGLEAQWSRVLGRVHATI 401


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.140    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,939
Number of Sequences: 429
Number of extensions: 1736
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 203
length of database: 140,377
effective HSP length: 55
effective length of query: 148
effective length of database: 116,782
effective search space: 17283736
effective search space used: 17283736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)