GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002910-TA|BGIBMGA002910-PA|IPR002645|Sulfate
transporter/antisigma-factor antagonist STAS, IPR011547|Sulphate
transporter
         (564 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   3.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   8.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 100 LTAFVSGVVILLMGVFHLGFLVEFISM 126
           L  FV+GVV ++ G+  L  +V +IS+
Sbjct: 177 LCVFVAGVVFIVSGLLMLVGMVMYISV 203


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 147 PFFGLSGSSGNNFTESVQNLIRNF 170
           P FG+ G S ++ +  V NL+R F
Sbjct: 69  PIFGVIGGSYSSVSLQVANLLRLF 92


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 147 PFFGLSGSSGNNFTESVQNLIRNF 170
           P FG+ G S ++ +  V NL+R F
Sbjct: 159 PIFGVIGGSYSSVSLQVANLLRLF 182


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 279 GFIVLPFVAIMETVAIAKAFAGGAIVDANQEMIALGLC 316
           GF +L F+   E +AI+ AF      D  ++MI    C
Sbjct: 452 GFCLL-FLMFFECIAISWAFGVNRFYDGIRDMIGYYPC 488


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 279 GFIVLPFVAIMETVAIAKAFAGGAIVDANQEMIALGLC 316
           GF +L F+   E +AI+ AF      D  ++MI    C
Sbjct: 505 GFCLL-FLMFFECIAISWAFGVNRFYDGIRDMIGYYPC 541


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 43  YAVVAGQSPEHGLYASLTSGVIYVIFGSRYNVT 75
           + VV  Q P H  Y +    +I  +F +R+N T
Sbjct: 286 FLVVTAQ-PVHSAYKAPEETIISSVFTTRHNAT 317


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.140    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,344
Number of Sequences: 429
Number of extensions: 4859
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 6
length of query: 564
length of database: 140,377
effective HSP length: 61
effective length of query: 503
effective length of database: 114,208
effective search space: 57446624
effective search space used: 57446624
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)