GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002909-TA|BGIBMGA002909-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (313 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    32   0.006
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 23/98 (23%)

Query: 197 QHDLACCGVYSPEDYKNPKIPKYFPPDVPISCCPTYDPQRSPLLQEKERELCKAQRVYHP 256
           Q +L CCGV+S  DY N K        +P SCC       SP     E   C     Y  
Sbjct: 140 QKNLQCCGVHSLSDY-NDK-------PIPASCC------NSP-----ENNTCSISNSY-T 179

Query: 257 AGCTDLVIKAFR--DTAYLVLAVTINLI-MLEILCAIC 291
            GC + +    +   T +  +A+ I ++ ++ I+CA+C
Sbjct: 180 NGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALC 217


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 208 PEDYKNPKIPKY-FPPDVPISCCPTYDPQRSPLLQEKERELCKAQRVYHP 256
           P++  +  IP+    P +P+ C P      S +L     +L  +Q +  P
Sbjct: 774 PQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPP 823


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,787
Number of Sequences: 429
Number of extensions: 3608
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 313
length of database: 140,377
effective HSP length: 58
effective length of query: 255
effective length of database: 115,495
effective search space: 29451225
effective search space used: 29451225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)