GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002908-TA|BGIBMGA002908-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (206 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    40   2e-05
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.39 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 60  YVGFLMLLTVLEVLIGIYVSIQ-RYGLQFRVGEWIREEFYRNVTGASKEAHRKLW-ERIQ 117
           +  FL+ + ++++ + +Y  I  +    FR    I E++     G    +  K + + IQ
Sbjct: 84  FASFLLFILLVQIAVAVYAFIVVKNDDNFRN---ISEKYQEIFNGYFLNSESKDFIDFIQ 140

Query: 118 INYQCCGLNGPQDYTAMDQPISLSCCYQAYQASTLEAEQKMYKTCIE 164
            N QCCG++   DY   D+PI  SCC  + + +T          C+E
Sbjct: 141 KNLQCCGVHSLSDYN--DKPIPASCC-NSPENNTCSISNSYTNGCVE 184


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 95  EEFYRNVTGASKEAHRKLWERIQ 117
           E+++ ++   + EAHR  WE +Q
Sbjct: 74  EQYFSSIRRLNSEAHRIRWESVQ 96


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 122 CCGLNGPQDYTAMDQPISLS 141
           CCG+  P D T +    S S
Sbjct: 88  CCGMRWPGDATGLSNRSSTS 107


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,125
Number of Sequences: 429
Number of extensions: 1600
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 206
length of database: 140,377
effective HSP length: 55
effective length of query: 151
effective length of database: 116,782
effective search space: 17634082
effective search space used: 17634082
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)