GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002907-TA|BGIBMGA002907-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (169 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.5  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 116 LVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRK 153
           ++D+ I LSG     G  V+LH       + +  D++K
Sbjct: 401 ILDEPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKK 438


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 79  SHFNPEHKDHGHPNDVNRHV 98
           S F+ + KD G PND N ++
Sbjct: 345 SSFDFQSKDQGPPNDGNGNI 364


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 55  LPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHP 91
           L P  +      K DLS   ++ G+ F      HG P
Sbjct: 404 LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPP 440


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 55  LPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHP 91
           L P  +      K DLS   ++ G+ F      HG P
Sbjct: 404 LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPP 440


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 46  VHVQGGITGL 55
           +HV GG+TGL
Sbjct: 205 IHVVGGLTGL 214


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 64  VHEKGDLSGGC 74
           +H++G LS GC
Sbjct: 314 MHQRGKLSAGC 324


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.138    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,692
Number of Sequences: 429
Number of extensions: 2199
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 169
length of database: 140,377
effective HSP length: 53
effective length of query: 116
effective length of database: 117,640
effective search space: 13646240
effective search space used: 13646240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)