GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002905-TA|BGIBMGA002905-PA|IPR000582|Acyl-coA-binding
protein, ACBP
         (85 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   6.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 5   EQFKQVADKVRNWKTK 20
           +Q ++V +K+RNW +K
Sbjct: 178 QQAQEVHEKLRNWFSK 193


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 21   PSDDENLALYSLYKQATIGDVNIAQPSGLVE 51
            P+D+  +  Y+++ +   GD + AQ S  V+
Sbjct: 1390 PTDNAPIHGYTIHYKPEFGDWDTAQISSTVQ 1420


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 8   KQVADKVRN 16
           KQVAD++RN
Sbjct: 401 KQVADRLRN 409


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.125    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,940
Number of Sequences: 429
Number of extensions: 785
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 85
length of database: 140,377
effective HSP length: 47
effective length of query: 38
effective length of database: 120,214
effective search space:  4568132
effective search space used:  4568132
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.5 bits)
S2: 37 (19.0 bits)