GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002903-TA|BGIBMGA002903-PA|undefined
         (300 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   7.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 202 CLVVGTEDGYIIILDPQTFTTLSQGKKQW 230
           C V+   DG ++   P   T L   K  W
Sbjct: 165 CAVISMHDGLVLYTTPSICTALGYLKDAW 193


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 202 CLVVGTEDGYIIILDPQTFTTLSQGKKQW 230
           C V+   DG ++   P   T L   K  W
Sbjct: 160 CAVISMHDGLVLYTTPSICTALGYLKDAW 188


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 22  NLALVDLQNDKDYKLLVADFGKGEEG 47
           +L L ++  D+D  + +ADFG  +EG
Sbjct: 110 DLKLDNVLLDQDGHIKIADFGMCKEG 135


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,606
Number of Sequences: 429
Number of extensions: 3531
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 300
length of database: 140,377
effective HSP length: 57
effective length of query: 243
effective length of database: 115,924
effective search space: 28169532
effective search space used: 28169532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)