GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002895-TA|BGIBMGA002895-PA|IPR002464|ATP-dependent
helicase, DEAH-box, IPR003029|RNA binding S1, IPR001650|Helicase,
C-terminal, IPR007502|Helicase-associated region, IPR011709|Protein of
unknown function DUF1605, IPR014021|Helicase superfamily 1 and 2
ATP-binding, IPR014001|DEAD-like helicases, N-terminal,
IPR008994|Nucleic acid-binding, OB-fold
         (1215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          28   0.40 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    25   2.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    25   2.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   4.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   4.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   4.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   6.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   6.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    24   8.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    24   8.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   8.6  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 0.40
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 257 KTETVEEDHTVDIVTDPGLGTGVDLTRKVEDQYQIYSG 294
           +T T  + +TV+IV +PG G  V L     D    YSG
Sbjct: 298 ETSTRTDAYTVEIVLEPGTGINVTLKGYCIDMEVPYSG 335


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
            phosphatase protein.
          Length = 373

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 1045 SWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLG-----IMDRHKLDVVSAGKNTVR 1096
            SW NN F     ++  V    +  +  + K+L G     I  +H LDVVS  +   R
Sbjct: 193  SWTNNIFPRGELFDATVFTYNITNSTPLLKKLYGGPLLRIFTKHMLDVVSGTQKKKR 249


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
            precursor protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 1045 SWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLG-----IMDRHKLDVVSAGKNTVR 1096
            SW NN F     ++  V    +  +  + K+L G     I  +H LDVVS  +   R
Sbjct: 208  SWTNNIFPRGELFDATVFTYNITNSTPLLKKLYGGPLLRIFTKHMLDVVSGTQKKKR 264


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 578 LIVIGETGSGKTTQITQYVCECG 600
           ++VIG   SGK+T     + +CG
Sbjct: 10  IVVIGHVDSGKSTTTGHLIYKCG 32


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 782 TACEILYERMKSLGPDV-PELIILPVYSAL 810
           TAC  LYER++  GP +   LI+L + + +
Sbjct: 49  TACAALYERVEWSGPWILVTLIVLAIVNVM 78


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 578 LIVIGETGSGKTTQITQYVCECG 600
           ++VIG   SGK+T     + +CG
Sbjct: 10  IVVIGHVDSGKSTTTGHLIYKCG 32


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 1105 FFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWV 1143
            F +N ++      ++ LVD+ + Y+ PS       P WV
Sbjct: 310  FIKNVSRDSNSSDFKKLVDNWMTYMPPSGI-----PNWV 343


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 777 QEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATN 834
           QEEI T  +   +R KS   D+ EL +      L S M+  + E   PG  K V+AT+
Sbjct: 153 QEEIRTLLDESIQR-KS---DITELDVSKRCKDLASFMENLLQETRTPGFGKDVLATD 206


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 664 CLMDLDLKAYSVIMLDEAHERTIHTDVLFGLLKQAVQKRPE 704
           C M   L+A+S++  DEA+   +  D++ GLL   +Q+R +
Sbjct: 72  CYMYCLLEAFSLVD-DEAN---VDEDIMLGLLPDQLQERAQ 108


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 664 CLMDLDLKAYSVIMLDEAHERTIHTDVLFGLLKQAVQKRPE 704
           C M   L+A+S++  DEA+   +  D++ GLL   +Q+R +
Sbjct: 72  CYMYCLLEAFSLVD-DEAN---VDEDIMLGLLPDQLQERAQ 108


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 1105 FFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWV 1143
            F +N ++      ++ L+D+ + Y+ PS       P WV
Sbjct: 310  FIKNVSRDSNSSDFKKLIDNWMTYMPPSGI-----PNWV 343


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,888
Number of Sequences: 429
Number of extensions: 12820
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 11
length of query: 1215
length of database: 140,377
effective HSP length: 66
effective length of query: 1149
effective length of database: 112,063
effective search space: 128760387
effective search space used: 128760387
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)