GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002890-TA|BGIBMGA002890-PA|IPR011038|Calycin-like
         (160 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.28 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.28 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.28 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   4.5  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 91  FTDYDQFALVWSCSSVSLAHSDRIWVL 117
           F  YD  + + S S +++   DR+WVL
Sbjct: 112 FAKYDDCSGIVSASKLAIDKCDRLWVL 138


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 91  FTDYDQFALVWSCSSVSLAHSDRIWVL 117
           F  YD  + + S S +++   DR+WVL
Sbjct: 112 FAKYDDCSGIVSASKLAIDKCDRLWVL 138


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 91  FTDYDQFALVWSCSSVSLAHSDRIWVL 117
           F  YD  + + S S +++   DR+WVL
Sbjct: 112 FAKYDDCSGIVSASKLAIDKCDRLWVL 138


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 78  GRLLPGAGQYNILFTDYDQFALVWSCSSVSLAHSDRIWVL 117
           GRLL     ++  F ++   + + S   +++   DR+WVL
Sbjct: 102 GRLLKPYPDWS--FAEFKDCSKIVSAFKIAIDKFDRLWVL 139


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 91  FTDYDQFALVWSCSSVSLAHSDRIWVL 117
           F  Y+  + + S   +++   DR+WVL
Sbjct: 118 FAKYEDCSGIVSAFKIAVDKFDRLWVL 144


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,897
Number of Sequences: 429
Number of extensions: 1878
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 160
length of database: 140,377
effective HSP length: 53
effective length of query: 107
effective length of database: 117,640
effective search space: 12587480
effective search space used: 12587480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)