GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002887-TA|BGIBMGA002887-PA|undefined
         (237 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.15 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.15 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.15 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 20  GARSPVVSRQDSSGTLKTTISLGKNPSIVH 49
           GA+SP V  + + GTL  +    K P ++H
Sbjct: 640 GAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 20  GARSPVVSRQDSSGTLKTTISLGKNPSIVH 49
           GA+SP V  + + GTL  +    K P ++H
Sbjct: 640 GAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 20  GARSPVVSRQDSSGTLKTTISLGKNPSIVH 49
           GA+SP V  + + GTL  +    K P ++H
Sbjct: 640 GAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/61 (22%), Positives = 23/61 (37%)

Query: 17  SPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYG 76
           SP G  SP          L +T   G+N ++    P + +      C + G      +YG
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYG 123

Query: 77  L 77
           +
Sbjct: 124 V 124


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/61 (22%), Positives = 23/61 (37%)

Query: 17  SPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYG 76
           SP G  SP          L +T   G+N ++    P + +      C + G      +YG
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYG 123

Query: 77  L 77
           +
Sbjct: 124 V 124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,675
Number of Sequences: 429
Number of extensions: 2874
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 237
length of database: 140,377
effective HSP length: 56
effective length of query: 181
effective length of database: 116,353
effective search space: 21059893
effective search space used: 21059893
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)