GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002886-TA|BGIBMGA002886-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (213 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.54 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   6.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 2  KTVLITGANRGLGLGMVKYLTHCKKSQRIIATCRNESEIKNIV 44
          +  L+TGAN G+G  +++ L    K  ++I       ++K +V
Sbjct: 8  EVALVTGANSGIGKCLIECLV--GKGMKVIGIAPQVDKMKTLV 48


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 11  RGLGLGMVKYLTHCKKSQRIIATCRNESEIKNIV 44
           RG  L    +L H   S  I+   RN + +K  V
Sbjct: 468 RGAVLARFTHLNHADFSYTIVINNRNNTSMKGTV 501


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 131 GFYPYRCSKAALNAATKSM 149
           G  P++C K + +   KSM
Sbjct: 13  GSKPFKCEKCSYSCVNKSM 31


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,085
Number of Sequences: 429
Number of extensions: 1844
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 213
length of database: 140,377
effective HSP length: 55
effective length of query: 158
effective length of database: 116,782
effective search space: 18451556
effective search space used: 18451556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)